Al.me.I4

Sequence from Genbank entry (intron is on the antisense strand).

The boundaries of the intron are marked as red and ORF is marked

as blue, with start and stop codons underlined.

Intron on antisense strand

3' end

gtc
19681 gagtagaccc agggaactgc ccccccgagt ctctcacaga acctggactt gaaagtctcc
19741 cttcatccgg ctcttcttaa tcagttcttg ggacatatgc ccatcttcca gtggacaaac
19801 agtgatggtg tttcttctgc aatagagctt aatctcctta aagctgccat aaatttattt
19861 ttatagcgtt tagacttctt catcatccat ctggcaagac tcaaattgac acacgataga
19921 attgcatgaa ctttacttgc tgtaaattta tcgaaatagt tagcccaacc tcgaataata
19981 gggttcattt tctctgctaa ttcggttaaa gacagatagg aattctttct tagtttctta
20041 attttatcca tgaagctctt tatggcaatt ttgctaactg ccggggtgaa tcctgtgaaa
20101 taatttccct tctttgtttt caccgtacga gctctgaatg tatatcctag aaaatcaaag
20161 ttggtgtgga tatggttttg tttcctgttg tcatctttgc agtaaataat cttggtttta
20221 tttggatgga tttctaggtg gcaatcttta aatcgctctc ctagtttaag caagagtact
20281 tctgcttctt ttaaactatg actgtgtatt aatccatcat ctgcgtaacg tacccaaggg
20341 ttatttgagt gttttcgtgt catccagtgg tcaaaagcat agtgcataaa gagatttgca
20401 agcactgcgc tgattactcc accttggggg gttccttttg ttctttcgac gtgtattcca
20461 tctgacataa ccatcggcac ttttagtgtt ctttcaatat ataggataac ccacttctca
20521 tttgtatgtt gcttcactgc tttcatgaga aggtcgtgat taatgttgtc gaatagaccc
20581 acgatgtcaa actcaattaa ccagtcatac tcccaacacc gttttctcgt cacttcgata
20641 gcatctatag cacttttatt ctctctatac ccatatgaat cctcataaaa aatgggttct
20701 actttgggat ttagctccga gaccataaca ttttgtgcga tacgatcgtc aatacttgga
20761 acacctaaga ctctaactcc tccgtttttc ttgggaattt ctacaccgcg tacagcttgc
20821 ggaaagtaac ttcctgaaga catgctattc cataatttat agaggttatc ttccaagttg
20881 ttttcatatt cttggagtgt tacctcatca atgcctggag cacctttgtt agcttctact
20941 tttttaaatg cctcaaacac tgcgcgtttt gtaatttgaa agggtttctc cttcttcata
21001 gattcctccc atctgtggtt gacctacatt ttaggattga ttaagtgagt ccctttgctc
21061 cacgactatt accgtcgttt cttcactact acggactcat ccgcccctgt tcacggcttc
21121 gatacttgca tcctaacatt tcttgtgctt ggattcttct cttaacatcc gtcaacaggt
21181 tctcctgttc catctaaaag cctaaactac gctcctgcaa cctatgcacc ggctgtcatc
21241 tggtcagtaa gcagatttct tccagactta tcccagcatt tcccgactac actggttttg
21301 acatgcattt ttcctgataa cgatgcttta atggttattc actttcgttc agcttcgcag
21361 ttcacacttg actgtttata cagccttttt cccataacgc tcaataccga agacattaat
21421 ctacagcacc tatgggcagt ttgaaacccg tatctgcata ccgatttcga aggaccgacc
21481 ttcatctttt agatagcatc atttcagacg ttttaaacct cctttctttg tcttactttg
21541 ttcaggacac ac

5' end

Intron on sense strand

5' end

1 gtgtgtcctg aacaaagtaa gacaaagaaa ggaggtttaa aacgtctgaa atgatgctat

61 ctaaaagatg aaggtcggtc cttcgaaatc ggtatgcaga tacgggtttc aaactgccca

121 taggtgctgt agattaatgt cttcggtatt gagcgttatg ggaaaaaggc tgtataaaca

181 gtcaagtgtg aactgcgaag ctgaacgaaa gtgaataacc attaaagcat cgttatcagg

241 aaaaatgcat gtcaaaacca gtgtagtcgg gaaatgctgg gataagtctg gaagaaatct

301 gcttactgac cagatgacag ccggtgcata ggttgcagga gcgtagttta ggcttttaga

361 tggaacagga gaacctgttg acggatgtta agagaagaat ccaagcacaa gaaatgttag

421 gatgcaagta tcgaagccgt gaacaggggc ggatgagtcc gtagtagtga agaaacgacg

481 gtaatagtcg tggagcaaag ggactcactt aatcaatcct aaaatgtagg tcaaccacag

541 atgggaggaa tctatgaaga aggagaaacc ctttcaaatt acaaaacgcg cagtgtttga

601 ggcatttaaa aaagtagaag ctaacaaagg tgctccaggc attgatgagg taacactcca

661 agaatatgaa aacaacttgg aagataacct ctataaatta tggaatagca tgtcttcagg

721 aagttacttt ccgcaagctg tacgcggtgt agaaattccc aagaaaaacg gaggagttag

781 agtcttaggt gttccaagta ttgacgatcg tatcgcacaa aatgttatgg tctcggagct

841 aaatcccaaa gtagaaccca ttttttatga ggattcatat gggtatagag agaataaaag

901 tgctatagat gctatcgaag tgacgagaaa acggtgttgg gagtatgact ggttaattga

961 gtttgacatc gtgggtctat tcgacaacat taatcacgac cttctcatga aagcagtgaa

1021 gcaacataca aatgagaagt gggttatcct atatattgaa agaacactaa aagtgccgat

1081 ggttatgtca gatggaatac acgtcgaaag aacaaaagga accccccaag gtggagtaat

1141 cagcgcagtg cttgcaaatc tctttatgca ctatgctttt gaccactgga tgacacgaaa

1201 acactcaaat aacccttggg tacgttacgc agatgatgga ttaatacaca gtcatagttt

1261 aaaagaagca gaagtactct tgcttaaact aggagagcga tttaaagatt gccacctaga

1321 aatccatcca aataaaacca agattattta ctgcaaagat gacaacagga aacaaaacca

1381 tatccacacc aactttgatt ttctaggata tacattcaga gctcgtacgg tgaaaacaaa

1441 gaagggaaat tatttcacag gattcacccc ggcagttagc aaaattgcca taaagagctt

1501 catggataaa attaagaaac taagaaagaa ttcctatctg tctttaaccg aattagcaga

1561 gaaaatgaac cctattattc gaggttgggc taactatttc gataaattta cagcaagtaa

1621 agttcatgca attctatcgt gtgtcaattt gagtcttgcc agatggatga tgaagaagtc

1681 taaacgctat aaaaataaat ttatggcagc tttaaggaga ttaagctcta ttgcagaaga

1741 aacaccatca ctgtttgtcc actggaagat gggcatatgt cccaagaact gattaagaag

1801 agccggatga agggagactt tcaagtccag gttctgtgag agactcgggg gggcagttcc

1861 ctgggtctac tcgac

3' end

[top]

[Intron and flanking sequences]

19321 gaggtcaata aaccctttga ggcattatct gtctatagaa gcaaggatat cgtcgaaaaa
19381 ggtttcggca accttaaaga gcgattgaat ttcaggagaa tgcaggtttc ttctgaatta
19441 tgcttgaacg gcaagctttt tattgaattt attgcactca tctacttatc ctatgtgaaa
19501 aagaggatgc aagatgcaga tctttttgat aagtggacgc tgcaaggatt attggatgaa
19561 ctcgatgtga ttgagtcatt tgaggcgcct ggacatggtc ggatactagg cgaggtcact
19621 gataaacaga aaaagctcta tgaagccctg gaggtggaac caccctcgtt ataaattgtc
19681 gagtagaccc agggaactgc ccccccgagt ctctcacaga acctggactt gaaagtctcc
19741 cttcatccgg ctcttcttaa tcagttcttg ggacatatgc ccatcttcca gtggacaaac
19801 agtgatggtg tttcttctgc aatagagctt aatctcctta aagctgccat aaatttattt
19861 ttatagcgtt tagacttctt catcatccat ctggcaagac tcaaattgac acacgataga
19921 attgcatgaa ctttacttgc tgtaaattta tcgaaatagt tagcccaacc tcgaataata
19981 gggttcattt tctctgctaa ttcggttaaa gacagatagg aattctttct tagtttctta
20041 attttatcca tgaagctctt tatggcaatt ttgctaactg ccggggtgaa tcctgtgaaa
20101 taatttccct tctttgtttt caccgtacga gctctgaatg tatatcctag aaaatcaaag
20161 ttggtgtgga tatggttttg tttcctgttg tcatctttgc agtaaataat cttggtttta
20221 tttggatgga tttctaggtg gcaatcttta aatcgctctc ctagtttaag caagagtact
20281 tctgcttctt ttaaactatg actgtgtatt aatccatcat ctgcgtaacg tacccaaggg
20341 ttatttgagt gttttcgtgt catccagtgg tcaaaagcat agtgcataaa gagatttgca
20401 agcactgcgc tgattactcc accttggggg gttccttttg ttctttcgac gtgtattcca
20461 tctgacataa ccatcggcac ttttagtgtt ctttcaatat ataggataac ccacttctca
20521 tttgtatgtt gcttcactgc tttcatgaga aggtcgtgat taatgttgtc gaatagaccc
20581 acgatgtcaa actcaattaa ccagtcatac tcccaacacc gttttctcgt cacttcgata
20641 gcatctatag cacttttatt ctctctatac ccatatgaat cctcataaaa aatgggttct
20701 actttgggat ttagctccga gaccataaca ttttgtgcga tacgatcgtc aatacttgga
20761 acacctaaga ctctaactcc tccgtttttc ttgggaattt ctacaccgcg tacagcttgc
20821 ggaaagtaac ttcctgaaga catgctattc cataatttat agaggttatc ttccaagttg
20881 ttttcatatt cttggagtgt tacctcatca atgcctggag cacctttgtt agcttctact
20941 tttttaaatg cctcaaacac tgcgcgtttt gtaatttgaa agggtttctc cttcttcata
21001 gattcctccc atctgtggtt gacctacatt ttaggattga ttaagtgagt ccctttgctc
21061 cacgactatt accgtcgttt cttcactact acggactcat ccgcccctgt tcacggcttc
21121 gatacttgca tcctaacatt tcttgtgctt ggattcttct cttaacatcc gtcaacaggt
21181 tctcctgttc catctaaaag cctaaactac gctcctgcaa cctatgcacc ggctgtcatc
21241 tggtcagtaa gcagatttct tccagactta tcccagcatt tcccgactac actggttttg
21301 acatgcattt ttcctgataa cgatgcttta atggttattc actttcgttc agcttcgcag
21361 ttcacacttg actgtttata cagccttttt cccataacgc tcaataccga agacattaat
21421 ctacagcacc tatgggcagt ttgaaacccg tatctgcata ccgatttcga aggaccgacc
21481 ttcatctttt agatagcatc atttcagacg ttttaaacct cctttctttg tcttactttg
21541 ttcaggacac actcgggaat gcaggtaaca aatagctata catatacata aaactccttt
21601 aaatagcact taattctact atttaaagga gttgttaagt gcaaaagaaa tacatgttct
21661 ttcaaacaaa tataaatatg ataaatatcc aaagcaaaag tgtcacatat taagtaaaca
21721 atcggttggg tactcccctt cttttgtaca aactgctata gggattgttt aattaaatta
21781 aaagaatttt ttgcattttg tgcagctgca caagatagag ctccatcaat aataatagaa
21841 aatggaaaaa ttacgtttgt aaaagcgtat aatgcgtcaa aaactgcatc ctcataatca

[top]

[ORF sequence]

MKKEKPFQITKRAVFEAFKKVEANKGAPGIDEVTLQEYENNLEDNLYKLWNSMSSGSY

FPQAVRGVEIPKKNGGVRVLGVPSIDDRIAQNVMVSELNPKVEPIFYEDSYGYRENKS

AIDAIEVTRKRCWEYDWLIEFDIVGLFDNINHDLLMKAVKQHTNEKWVILYIERTLKV

PMVMSDGIHVERTKGTPQGGVISAVLANLFMHYAFDHWMTRKHSNNPWVRYADDGLIH

SHSLKEAEVLLLKLGERFKDCHLEIHPNKTKIIYCKDDNRKQNHIHTNFDFLGYTFRA

RTVKTKKGNYFTGFTPAVSKIAIKSFMDKIKKLRKNSYLSLTELAEKMNPIIRGWANY

FDKFTASKVHAILSCVNLSLARWMMKKSKRYKNKFMAALRRLSSIAEETPSLFVHWKM

GICPKN

[top]

[Secondary structure]

[top]