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Information of B.j.I1 intron (Format of information for each intron)
[Intron and flanking sequence]
Note: Redundant intron copies found in
AP005942 Bradyrhizobium japonicum (111919-113723)
AF322013 Bradyrhizobium japonicum (154084-155888)
Sequence
from Genbank entry. Intron is identified in red.
The ORF
is identified in blue with start and stop codons
underlined.
5' end
gtgtgca acgaacaccg gcggcgacgc cggtgatgct gtgttgaaga tgggagtttg
154141 gcctcccgga gccggccttc aggggcaggc ttcaaaccac ctcatgctgc cgcgttcaaa
154201 aggcgcggtg gtgagcgatg aggaaaaagg cggtgaatga aaccgtcagg taagtgacaa
154261 gaagatgagt gcaagcgaac cgccgatgac gtatcgaaat ggtttcaaga tgctgtcaag
154321 acgggcgtgg ggtagtagcg ctcggaggag tgtgggcgga gcctgtttac ggcccacgcg
154381 gcagccggtg cataggcggc atgatctcgt cacaggcttc aacacggaac gtcggaacct
154441 gacgcaatgc gtcaggggcg gagcaacccg taatagtgag gaagcggctg taatggccgt
154501 ggagcaaagg ggttgcgtta tcctgccggc gtcactgcgc caaccgggaa gaccgggagg
154561 agcacggtga agtccggcaa accgttgccc atcaccaagc ggatggtgtg ggaagcctat
154621 aagcttgtga agaagggaaa ggcggcgggc gtcgatggcc agagtctcga agactttgcc
154681 ggcgatcttg agaaccaccg ctaccggctg tggaatcggt tggtgtcagg aagttacttc
154741 ccgccaccag tgcggcgggt cgagattcct aaggccggcg gtgggattcg tcctcttggc
154801 ataccgacgg tcgcggaccg tatcgcccag atggtggtca aacggtgtct ggagccggtg
154861 ttggatggag aatttgatcc ggactcctac ggctacaggc ccggaaaatc ggcccatcag
154921 gccatagagc aggcgcgtaa gcggtgctgg cagcacgact gggtcgtaga tctcgacaac
154981 aagagctttt tcgacacgat cgatcatgaa ctcttgatgc gcgcggtcta tcgacacacg
155041 aaagctgact ggatccggct ctacattgag cggtggctta aggctccggt cgagatgccc
155101 gatggatcgg ttcgggcgag gacgacaggc aggtctcaag ggggtgtggt cagtccaatc
155161 ctggcaaact tgttcctgca ctacgtgttc gatgtttgga tgaaggggtc ttatccccac
155221 attccgttcg aacgctacgc cgacgacatc atctgccatt gccgcacgcg gcaggaagcg
155281 gaggaactca aatcggcgct ggaacgacgg tttgctgact gccatttatt gctgcatccg
155341 gagaagacta aagtggtcta ctgcgctgac agcaatcgac ggcggtccta cccgcagatc
155401 cattttgact tcctgggctt tagcttccgc ccccgtatgg cgaagaaccg gtggggcagg
155461 atcttcacct gcttccttcc gggcgtgagt ccgaactctc tcaaggagat gagggctcgc
155521 attcgaggat ggcgcttgcc tcagcactcg ccgcttccgc ttgaagacat cgcgcgtagt
155581 ctcagccccg tccttcgggg ctgggatcaa tactacgggc gattctaccc gacggaactg
155641 cgtaggctct atgagtactt cgatgagcgc ctcggcgcgt ggcttcggtg caagtacaag
155701 caactgaagg gccatcgggg acggtcgttg cggaaactca acgagatggc gaagcaaaat
155761 ccaaagctct ttgtccattg gcaaaagctt ggacgggcta cggttggata acaggagccg
155821 gatgatgcga gagtatcacg tccggatctg tgagcggccg agggtgaaac tccctcggcc
155881 tactcgac
3' end
[Intron and flanking sequence]
153541 attcgcagcc gtggcggctg cagcatgcga taggccctag aagcctcgcg cggtcgccat
153601 gcacgggagg ctgtcagaag aaggctgtga tgaccaagta gattccagcc caaagcaccg
153661 catttatgag aagtgcgacg aggagctccc agttccacct tctctgcggt tgcaaggagg
153721 gacgatcggc gccgaaatgc ttgatcattg ggggctttgt tgcgcgcgaa tgtacgtctc
153781 attgcgctga gcgccggcca acagaaatat gccaagcttt gcatgcctcc tatcactcat
153841 aagctagcag tcctctcttc atagggcggt aggagaaacg atgttcgttg cgtcgcgacc
153901 actcggccga ttgattgctc gtgtatcttc ggaacggcaa ggtcgcgttc ggcccacgca
153961 gcaagctaca tgccagaagg tagaactgtc ggcagcgcct ttcatttgat gggttggtca
154021 aacggagccg ctgcgcgacg tcggagtcgc gacattcctg tcggaaacaa aacccgcatt
154081 accgtgtgca acgaacaccg gcggcgacgc cggtgatgct gtgttgaaga tgggagtttg
154141 gcctcccgga gccggccttc aggggcaggc ttcaaaccac ctcatgctgc cgcgttcaaa
154201 aggcgcggtg gtgagcgatg aggaaaaagg cggtgaatga aaccgtcagg taagtgacaa
154261 gaagatgagt gcaagcgaac cgccgatgac gtatcgaaat ggtttcaaga tgctgtcaag
154321 acgggcgtgg ggtagtagcg ctcggaggag tgtgggcgga gcctgtttac ggcccacgcg
154381 gcagccggtg cataggcggc atgatctcgt cacaggcttc aacacggaac gtcggaacct
154441 gacgcaatgc gtcaggggcg gagcaacccg taatagtgag gaagcggctg taatggccgt
154501 ggagcaaagg ggttgcgtta tcctgccggc gtcactgcgc caaccgggaa gaccgggagg
154561 agcacggtga agtccggcaa accgttgccc atcaccaagc ggatggtgtg ggaagcctat
154621 aagcttgtga agaagggaaa ggcggcgggc gtcgatggcc agagtctcga agactttgcc
154681 ggcgatcttg agaaccaccg ctaccggctg tggaatcggt tggtgtcagg aagttacttc
154741 ccgccaccag tgcggcgggt cgagattcct aaggccggcg gtgggattcg tcctcttggc
154801 ataccgacgg tcgcggaccg tatcgcccag atggtggtca aacggtgtct ggagccggtg
154861 ttggatggag aatttgatcc ggactcctac ggctacaggc ccggaaaatc ggcccatcag
154921 gccatagagc aggcgcgtaa gcggtgctgg cagcacgact gggtcgtaga tctcgacaac
154981 aagagctttt tcgacacgat cgatcatgaa ctcttgatgc gcgcggtcta tcgacacacg
155041 aaagctgact ggatccggct ctacattgag cggtggctta aggctccggt cgagatgccc
155101 gatggatcgg ttcgggcgag gacgacaggc aggtctcaag ggggtgtggt cagtccaatc
155161 ctggcaaact tgttcctgca ctacgtgttc gatgtttgga tgaaggggtc ttatccccac
155221 attccgttcg aacgctacgc cgacgacatc atctgccatt gccgcacgcg gcaggaagcg
155281 gaggaactca aatcggcgct ggaacgacgg tttgctgact gccatttatt gctgcatccg
155341 gagaagacta aagtggtcta ctgcgctgac agcaatcgac ggcggtccta cccgcagatc
155401 cattttgact tcctgggctt tagcttccgc ccccgtatgg cgaagaaccg gtggggcagg
155461 atcttcacct gcttccttcc gggcgtgagt ccgaactctc tcaaggagat gagggctcgc
155521 attcgaggat ggcgcttgcc tcagcactcg ccgcttccgc ttgaagacat cgcgcgtagt
155581 ctcagccccg tccttcgggg ctgggatcaa tactacgggc gattctaccc gacggaactg
155641 cgtaggctct atgagtactt cgatgagcgc ctcggcgcgt ggcttcggtg caagtacaag
155701 caactgaagg gccatcgggg acggtcgttg cggaaactca acgagatggc gaagcaaaat
155761 ccaaagctct ttgtccattg gcaaaagctt ggacgggcta cggttggata acaggagccg
155821 gatgatgcga gagtatcacg tccggatctg tgagcggccg agggtgaaac tccctcggcc
155881 tactcgacag caaaaggtga gcgcctcgcg agcgtcatgc cgtatgacct tgccccgtgg
155941 acttaatcca gattgaagtt cgctctggcc gatatgagga ccagagcatg aagcgcagcc
156001 gctttacgga agagcagatc atcgggattt tgaaggagca cgaagctggc gtgtcggttg
156061 ccgatctgtg ccggaagcac ggcgtcagcg atgccagcat ctacaaatgg aaagccaagt
156121 gtggcgggat ggaggtctcg gaggccaagc ggctgaggac gctggaggat gagaacacgc
156181 ggctgaagcg gcttttggcc gatcgtggac gcccacggga tgagcgaacg gcgggcgtgt
156241 aaagccatcg gctgttgccg catgaccatc agatatcgga cgacccgggc ggacgacgcg
156301 gccctacgcc aacgcatgag agcgattgcc gaggtgcgcc gtcgcttcgg ctatcggcgc
156361 ctgcatgttc tgctcaggcg ggagggctat ctggtcaacc acaagaaact gttccggctc
MKSGKPLPITKRMVWEAYKLVKKGKAAGVDGQSLEDFAGDLENHRYRLWNRLVSGSYF
PPPVRRVEIPKAGGGIRPLGIPTVADRIAQMVVKRCLEPVLDGEFDPDSYGYRPGKSA
HQAIEQARKRCWQHDWVVDLDNKSFFDTIDHELLMRAVYRHTKADWIRLYIERWLKAP
VEMPDGSVRARTTGRSQGGVVSPILANLFLHYVFDVWMKGSYPHIPFERYADDIICHC
RTRQEAEELKSALERRFADCHLLLHPEKTKVVYCADSNRRRSYPQIHFDFLGFSFRPR
MAKNRWGRIFTCFLPGVSPNSLKEMRARIRGWRLPQHSPLPLEDIARSLSPVLRGWDQ
YYGRFYPTELRRLYEYFDERLGAWLRCKYKQLKGHRGRSLRKLNEMAKQNPKLFVHWQ
KLGRATVG

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