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Information of B.j.I1 intron   (Format of information for each intron)

[Intron sequence]

[Intron and flanking sequence]

[ORF sequence]

[Secondary structure]

Note: Redundant intron copies found in

AP005942 Bradyrhizobium japonicum (111919-113723)

AF322013 Bradyrhizobium japonicum (154084-155888)

 

[intron sequence]

Sequence from Genbank entry.  Intron is identified in red.  The ORF
is identified in blue with start and stop codons underlined.  
               

5' end                 

          gtgtgca acgaacaccg gcggcgacgc cggtgatgct gtgttgaaga tgggagtttg

154141 gcctcccgga gccggccttc aggggcaggc ttcaaaccac ctcatgctgc cgcgttcaaa

154201 aggcgcggtg gtgagcgatg aggaaaaagg cggtgaatga aaccgtcagg taagtgacaa

154261 gaagatgagt gcaagcgaac cgccgatgac gtatcgaaat ggtttcaaga tgctgtcaag

154321 acgggcgtgg ggtagtagcg ctcggaggag tgtgggcgga gcctgtttac ggcccacgcg

154381 gcagccggtg cataggcggc atgatctcgt cacaggcttc aacacggaac gtcggaacct

154441 gacgcaatgc gtcaggggcg gagcaacccg taatagtgag gaagcggctg taatggccgt

154501 ggagcaaagg ggttgcgtta tcctgccggc gtcactgcgc caaccgggaa gaccgggagg

154561 agcacggtga agtccggcaa accgttgccc atcaccaagc ggatggtgtg ggaagcctat

154621 aagcttgtga agaagggaaa ggcggcgggc gtcgatggcc agagtctcga agactttgcc

154681 ggcgatcttg agaaccaccg ctaccggctg tggaatcggt tggtgtcagg aagttacttc

154741 ccgccaccag tgcggcgggt cgagattcct aaggccggcg gtgggattcg tcctcttggc

154801 ataccgacgg tcgcggaccg tatcgcccag atggtggtca aacggtgtct ggagccggtg

154861 ttggatggag aatttgatcc ggactcctac ggctacaggc ccggaaaatc ggcccatcag

154921 gccatagagc aggcgcgtaa gcggtgctgg cagcacgact gggtcgtaga tctcgacaac

154981 aagagctttt tcgacacgat cgatcatgaa ctcttgatgc gcgcggtcta tcgacacacg

155041 aaagctgact ggatccggct ctacattgag cggtggctta aggctccggt cgagatgccc

155101 gatggatcgg ttcgggcgag gacgacaggc aggtctcaag ggggtgtggt cagtccaatc

155161 ctggcaaact tgttcctgca ctacgtgttc gatgtttgga tgaaggggtc ttatccccac

155221 attccgttcg aacgctacgc cgacgacatc atctgccatt gccgcacgcg gcaggaagcg

155281 gaggaactca aatcggcgct ggaacgacgg tttgctgact gccatttatt gctgcatccg

155341 gagaagacta aagtggtcta ctgcgctgac agcaatcgac ggcggtccta cccgcagatc

155401 cattttgact tcctgggctt tagcttccgc ccccgtatgg cgaagaaccg gtggggcagg

155461 atcttcacct gcttccttcc gggcgtgagt ccgaactctc tcaaggagat gagggctcgc

155521 attcgaggat ggcgcttgcc tcagcactcg ccgcttccgc ttgaagacat cgcgcgtagt

155581 ctcagccccg tccttcgggg ctgggatcaa tactacgggc gattctaccc gacggaactg

155641 cgtaggctct atgagtactt cgatgagcgc ctcggcgcgt ggcttcggtg caagtacaag

155701 caactgaagg gccatcgggg acggtcgttg cggaaactca acgagatggc gaagcaaaat

155761 ccaaagctct ttgtccattg gcaaaagctt ggacgggcta cggttggata acaggagccg

155821 gatgatgcga gagtatcacg tccggatctg tgagcggccg agggtgaaac tccctcggcc

155881 tactcgac

3' end  

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[Intron and flanking sequence]

 

153541 attcgcagcc gtggcggctg cagcatgcga taggccctag aagcctcgcg cggtcgccat

153601 gcacgggagg ctgtcagaag aaggctgtga tgaccaagta gattccagcc caaagcaccg

153661 catttatgag aagtgcgacg aggagctccc agttccacct tctctgcggt tgcaaggagg

153721 gacgatcggc gccgaaatgc ttgatcattg ggggctttgt tgcgcgcgaa tgtacgtctc

153781 attgcgctga gcgccggcca acagaaatat gccaagcttt gcatgcctcc tatcactcat

153841 aagctagcag tcctctcttc atagggcggt aggagaaacg atgttcgttg cgtcgcgacc

153901 actcggccga ttgattgctc gtgtatcttc ggaacggcaa ggtcgcgttc ggcccacgca

153961 gcaagctaca tgccagaagg tagaactgtc ggcagcgcct ttcatttgat gggttggtca

154021 aacggagccg ctgcgcgacg tcggagtcgc gacattcctg tcggaaacaa aacccgcatt

154081 accgtgtgca acgaacaccg gcggcgacgc cggtgatgct gtgttgaaga tgggagtttg

154141 gcctcccgga gccggccttc aggggcaggc ttcaaaccac ctcatgctgc cgcgttcaaa

154201 aggcgcggtg gtgagcgatg aggaaaaagg cggtgaatga aaccgtcagg taagtgacaa

154261 gaagatgagt gcaagcgaac cgccgatgac gtatcgaaat ggtttcaaga tgctgtcaag

154321 acgggcgtgg ggtagtagcg ctcggaggag tgtgggcgga gcctgtttac ggcccacgcg

154381 gcagccggtg cataggcggc atgatctcgt cacaggcttc aacacggaac gtcggaacct

154441 gacgcaatgc gtcaggggcg gagcaacccg taatagtgag gaagcggctg taatggccgt

154501 ggagcaaagg ggttgcgtta tcctgccggc gtcactgcgc caaccgggaa gaccgggagg

154561 agcacggtga agtccggcaa accgttgccc atcaccaagc ggatggtgtg ggaagcctat

154621 aagcttgtga agaagggaaa ggcggcgggc gtcgatggcc agagtctcga agactttgcc

154681 ggcgatcttg agaaccaccg ctaccggctg tggaatcggt tggtgtcagg aagttacttc

154741 ccgccaccag tgcggcgggt cgagattcct aaggccggcg gtgggattcg tcctcttggc

154801 ataccgacgg tcgcggaccg tatcgcccag atggtggtca aacggtgtct ggagccggtg

154861 ttggatggag aatttgatcc ggactcctac ggctacaggc ccggaaaatc ggcccatcag

154921 gccatagagc aggcgcgtaa gcggtgctgg cagcacgact gggtcgtaga tctcgacaac

154981 aagagctttt tcgacacgat cgatcatgaa ctcttgatgc gcgcggtcta tcgacacacg

155041 aaagctgact ggatccggct ctacattgag cggtggctta aggctccggt cgagatgccc

155101 gatggatcgg ttcgggcgag gacgacaggc aggtctcaag ggggtgtggt cagtccaatc

155161 ctggcaaact tgttcctgca ctacgtgttc gatgtttgga tgaaggggtc ttatccccac

155221 attccgttcg aacgctacgc cgacgacatc atctgccatt gccgcacgcg gcaggaagcg

155281 gaggaactca aatcggcgct ggaacgacgg tttgctgact gccatttatt gctgcatccg

155341 gagaagacta aagtggtcta ctgcgctgac agcaatcgac ggcggtccta cccgcagatc

155401 cattttgact tcctgggctt tagcttccgc ccccgtatgg cgaagaaccg gtggggcagg

155461 atcttcacct gcttccttcc gggcgtgagt ccgaactctc tcaaggagat gagggctcgc

155521 attcgaggat ggcgcttgcc tcagcactcg ccgcttccgc ttgaagacat cgcgcgtagt

155581 ctcagccccg tccttcgggg ctgggatcaa tactacgggc gattctaccc gacggaactg

155641 cgtaggctct atgagtactt cgatgagcgc ctcggcgcgt ggcttcggtg caagtacaag

155701 caactgaagg gccatcgggg acggtcgttg cggaaactca acgagatggc gaagcaaaat

155761 ccaaagctct ttgtccattg gcaaaagctt ggacgggcta cggttggata acaggagccg

155821 gatgatgcga gagtatcacg tccggatctg tgagcggccg agggtgaaac tccctcggcc

155881 tactcgacag caaaaggtga gcgcctcgcg agcgtcatgc cgtatgacct tgccccgtgg

155941 acttaatcca gattgaagtt cgctctggcc gatatgagga ccagagcatg aagcgcagcc

156001 gctttacgga agagcagatc atcgggattt tgaaggagca cgaagctggc gtgtcggttg

156061 ccgatctgtg ccggaagcac ggcgtcagcg atgccagcat ctacaaatgg aaagccaagt

156121 gtggcgggat ggaggtctcg gaggccaagc ggctgaggac gctggaggat gagaacacgc

156181 ggctgaagcg gcttttggcc gatcgtggac gcccacggga tgagcgaacg gcgggcgtgt

156241 aaagccatcg gctgttgccg catgaccatc agatatcgga cgacccgggc ggacgacgcg

156301 gccctacgcc aacgcatgag agcgattgcc gaggtgcgcc gtcgcttcgg ctatcggcgc

156361 ctgcatgttc tgctcaggcg ggagggctat ctggtcaacc acaagaaact gttccggctc

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[ORF sequence]

 

MKSGKPLPITKRMVWEAYKLVKKGKAAGVDGQSLEDFAGDLENHRYRLWNRLVSGSYF

PPPVRRVEIPKAGGGIRPLGIPTVADRIAQMVVKRCLEPVLDGEFDPDSYGYRPGKSA

HQAIEQARKRCWQHDWVVDLDNKSFFDTIDHELLMRAVYRHTKADWIRLYIERWLKAP

VEMPDGSVRARTTGRSQGGVVSPILANLFLHYVFDVWMKGSYPHIPFERYADDIICHC

RTRQEAEELKSALERRFADCHLLLHPEKTKVVYCADSNRRRSYPQIHFDFLGFSFRPR

MAKNRWGRIFTCFLPGVSPNSLKEMRARIRGWRLPQHSPLPLEDIARSLSPVLRGWDQ

YYGRFYPTELRRLYEYFDERLGAWLRCKYKQLKGHRGRSLRKLNEMAKQNPKLFVHWQ

KLGRATVG

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[Secondary structure]

 

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