B.j.I2-2

Note: Redundant intron copies found in

AP005941 Bradyrhizobium japonicum (268242-270153)

AP005965 Bradyrhizobium japonicum (7419-9333)

AF322013 Bradyrhizobium japonicum (10857-12769)

Note: Multiple insertions

B.j.I2-1 BA000040 (2069342-2071254)

B.j.I2-2 BA000040 (9007418-9009333)

[Intron sequence]

Sequence from Genbank entry (intron is on the antisense strand).

The boundaries of the intron are marked as red and ORF is marked

as blue, with start and stop codons underlined.

Intron on antisense strand

3' end

gtt cgcggtaggg acacccatca
9007441 ctgggcgccc cccgcgcaga tcccggcgag cccaattaag gcaccgggct cctacctcgg
9007501 gtgtttgacg gcgaagcgca gcttcggcca tggatgaagg atgcgagcct tggggagcca
9007561 gtcatcggtg atctgcgtta tgcgatccca ggtcagacag gtccgctgac tgcgccgccg
9007621 aagcgtccgc ctccagagat cggtcagata gaaccgaaac gcattgagcg ctcggccatt
9007681 cgtcgggaca gcaaagtacg caaagtggcc ggtcaagacc tgcctcagcc atttcccttg
9007741 tgcagggatc ggccagtgca ttcggcgcct tagctcctcc ttgatttcgc ggagtttggt
9007801 tcgcaagcgg tcgctacggg tcttccgttg aagctggaag cgcccttggc gtgatttgcc
9007861 gcagataaac gtgaacccca tgaacgcaaa ggtttccggc tttccgagtc cgcgctgctt
9007921 gcgttgagcc gccgcatggc gaccaaactc aatcaggcgg gtcttggccg gatggagcgt
9007981 cagctcgaac tcctccagtc tcgcgcgcat cgcgtcaagg aaacgacgtg cgtcatcctc
9008041 gcgctcaaag ccgactacta catcgtccgc gtaacgcacg atgatcatgc cgccggagac
9008101 ctcgcgctgt cgccggcgtt tggcccacag gtcgagagcg tagtgcaggt agatgttgcc
9008161 gagaagcggt gaaatcaccg aaccttgacc cgttcccctg tcatcagcgg ctacgacgct
9008221 gtcttcgaga acacccccgc cttcagccat ttctgaatga ggcggatgat gcgcttgtcg
9008281 ccgatcctat gttccaagaa gcgaaccagc caaggttgac tgactgcgcc aaagaagttt
9008341 tggatgtcgg cgtcaatgat ccagttcacg ttccgcgtct cgatcgctgt gcagagcgcg
9008401 tccaacgcat catgtggtcc tctgccgggc cgaaacccgt aggaaaagcc acagaagtct
9008461 ccttcgtaga tggcgttgag cacgatgacg gttggcgccc tggacgattt tgtcttcgag
9008521 agccgcgatc gctaacgggc gctgcttgcc gtctgccttt ggtatgtacg tccggcgaga
9008581 cggttgcggg cgatacgctc ctcgttggac ccgtttgtgc agatcggcga gccggggctc
9008641 gagatcttcc tcgtagtcct cccacgtcat gccatccact ccgggagcag ccttacgcct
9008701 gagcgcaaag aacgccgccc gcagtgtatc gacattgatg tggtgaaaga gcgcggtgaa
9008761 ccggtccttc ttcctcagcc ttgcggctgt ccgtacgcgg tccagcgact gggtcatgcg
9008821 agcccggccc tgtgtccggt gcatgcgctg ctgttccgcg tttcccttgg tccccggcct
9008881 tggctccgcc cactccgccg ccagtaatcc ggctttgttc gttggcttct cagctactat
9008941 gccagagtca gacttctccg tgtcgtgcat cagcggctac agctcctcgc cttcccgctg
9009001 cggaccatct cctccgagaa ggaagatggc cgacccggag atatcccggt tcccgtacaa
9009061 ggagcttcca tacatgccag ggtctacgac cacgccgggt tggacgggtg ctcgcgtttg
9009121 cgcactcgcc catattgcct tccgctcttt ggacagcgtc ggctcccgag ataacactgt
9009181 ttcgcggctc aatggctggc ctgcatgctc ccctaccgac gcttcgccga caccctcgcg
9009241 gacgcctgcg cacggctcgg ggccgatgtg gttcgctaca ccttcatcgc aatggacttc
9009301 caccatctat tccttgccgg tctcccggcg cac

5' end

Intron on sense strand

5' end

1 gtgcgccggg agaccggcaa ggaatagatg gtggaagtcc attgcgatga aggtgtagcg

61 aaccacatcg gccccgagcc gtgcgcaggc gtccgcgagg gtgtcggcga agcgtcggta

121 ggggagcatg caggccagcc attgagccgc gaaacagtgt tatctcggga gccgacgctg

181 tccaaagagc ggaaggcaat atgggcgagt gcgcaaacgc gagcacccgt ccaacccggc

241 gtggtcgtag accctggcat gtatggaagc tccttgtacg ggaaccggga tatctccggg

301 tcggccatct tccttctcgg aggagatggt ccgcagcggg aaggcgagga gctgtagccg

361 ctgatgcacg acacggagaa gtctgactct ggcatagtag ctgagaagcc aacgaacaaa

421 gccggattac tggcggcgga gtgggcggag ccaaggccgg ggaccaaggg aaacgcggaa

481 cagcagcgca tgcaccggac acagggccgg gctcgcatga cccagtcgct ggaccgcgta

541 cggacagccg caaggctgag gaagaaggac cggttcaccg cgctctttca ccacatcaat

601 gtcgatacac tgcgggcggc gttctttgcg ctcaggcgta aggctgctcc cggagtggat

661 ggcatgacgt gggaggacta cgaggaagat ctcgagcccc ggctcgccga tctgcacaaa

721 cgggtccaac gaggagcgta tcgcccgcaa ccgtctcgcc ggacgtacat accaaaggca

781 gacggcaagc agcgcccgtt agcgatcgcg gctctcgaag acaaaatcgt ccagggcgcc

841 aaccgtcatc gtgctcaacg ccatctacga aggagacttc tgtggctttt cctacgggtt

901 tcggcccggc agaggaccac atgatgcgtt ggacgcgctc tgcacagcga tcgagacgcg

961 gaacgtgaac tggatcattg acgccgacat ccaaaacttc tttggcgcag tcagtcaacc

1021 ttggctggtt cgcttcttgg aacataggat cggcgacaag cgcatcatcc gcctcattca

1081 gaaatggctg aaggcggggg tgttctcgaa gacagcgtcg tagccgctga tgacagggga

1141 acgggtcaag gttcggtgat ttcaccgctt ctcggcaaca tctacctgca ctacgctctc

1201 gacctgtggg ccaaacgccg gcgacagcgc gaggtctccg gcggcatgat catcgtgcgt

1261 tacgcggacg atgtagtagt cggctttgag cgcgaggatg acgcacgtcg tttccttgac

1321 gcgatgcgcg cgagactgga ggagttcgag ctgacgctcc atccggccaa gacccgcctg

1381 attgagtttg gtcgccatgc ggcggctcaa cgcaagcagc gcggactcgg aaagccggaa

1441 acctttgcgt tcatggggtt cacgtttatc tgcggcaaat cacgccaagg gcgcttccag

1501 cttcaacgga agacccgtag cgaccgcttg cgaaccaaac tccgcgaaat caaggaggag

1561 ctaaggcgcc gaatgcactg gccgatccct gcacaaggga aatggctgag gcaggtcttg

1621 accggccact ttgcgtactt tgctgtcccg acgaatggcc gagcgctcaa tgcgtttcgg

1681 ttctatctga ccgatctctg gaggcggacg cttcggcggc gcagtcagcg gacctgtctg

1741 acctgggatc gcataacgca gatcaccgat gactggctcc ccaaggctcg catccttcat

1801 ccatggccga agctgcgctt cgccgtcaaa cacccgaggt aggagcccgg tgccttaatt

1861 gggctcgccg ggatctgcgc ggggggcgcc cagtgatggg tgtccctacc gcgaac

3' end

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[Intron and flanking sequence]

9007141 cgatatgaag gaggagcttg gacttgatca cttcgaaggg cgatcatggc aaggtcttca
9007201 tcgccacgcc cttatgacaa tgattgccta cgccttcctg caacatcgtc gcctcgcata
9007261 cgcggggcgg aaaaaaaaga atcaacgggc ctccgcctca accaaccatg cccgccgcac
9007321 gccatgccat cgtcgatctc atccttcggc cgccgcctca gcaatgccca tattgccgaa
9007381 agcaaatcct tgaaaagcag tggcgcaaac gcattctgtt cgcggtaggg acacccatca
9007441 ctgggcgccc cccgcgcaga tcccggcgag cccaattaag gcaccgggct cctacctcgg
9007501 gtgtttgacg gcgaagcgca gcttcggcca tggatgaagg atgcgagcct tggggagcca
9007561 gtcatcggtg atctgcgtta tgcgatccca ggtcagacag gtccgctgac tgcgccgccg
9007621 aagcgtccgc ctccagagat cggtcagata gaaccgaaac gcattgagcg ctcggccatt
9007681 cgtcgggaca gcaaagtacg caaagtggcc ggtcaagacc tgcctcagcc atttcccttg
9007741 tgcagggatc ggccagtgca ttcggcgcct tagctcctcc ttgatttcgc ggagtttggt
9007801 tcgcaagcgg tcgctacggg tcttccgttg aagctggaag cgcccttggc gtgatttgcc
9007861 gcagataaac gtgaacccca tgaacgcaaa ggtttccggc tttccgagtc cgcgctgctt
9007921 gcgttgagcc gccgcatggc gaccaaactc aatcaggcgg gtcttggccg gatggagcgt
9007981 cagctcgaac tcctccagtc tcgcgcgcat cgcgtcaagg aaacgacgtg cgtcatcctc
9008041 gcgctcaaag ccgactacta catcgtccgc gtaacgcacg atgatcatgc cgccggagac
9008101 ctcgcgctgt cgccggcgtt tggcccacag gtcgagagcg tagtgcaggt agatgttgcc
9008161 gagaagcggt gaaatcaccg aaccttgacc cgttcccctg tcatcagcgg ctacgacgct
9008221 gtcttcgaga acacccccgc cttcagccat ttctgaatga ggcggatgat gcgcttgtcg
9008281 ccgatcctat gttccaagaa gcgaaccagc caaggttgac tgactgcgcc aaagaagttt
9008341 tggatgtcgg cgtcaatgat ccagttcacg ttccgcgtct cgatcgctgt gcagagcgcg
9008401 tccaacgcat catgtggtcc tctgccgggc cgaaacccgt aggaaaagcc acagaagtct
9008461 ccttcgtaga tggcgttgag cacgatgacg gttggcgccc tggacgattt tgtcttcgag
9008521 agccgcgatc gctaacgggc gctgcttgcc gtctgccttt ggtatgtacg tccggcgaga
9008581 cggttgcggg cgatacgctc ctcgttggac ccgtttgtgc agatcggcga gccggggctc
9008641 gagatcttcc tcgtagtcct cccacgtcat gccatccact ccgggagcag ccttacgcct
9008701 gagcgcaaag aacgccgccc gcagtgtatc gacattgatg tggtgaaaga gcgcggtgaa
9008761 ccggtccttc ttcctcagcc ttgcggctgt ccgtacgcgg tccagcgact gggtcatgcg
9008821 agcccggccc tgtgtccggt gcatgcgctg ctgttccgcg tttcccttgg tccccggcct
9008881 tggctccgcc cactccgccg ccagtaatcc ggctttgttc gttggcttct cagctactat
9008941 gccagagtca gacttctccg tgtcgtgcat cagcggctac agctcctcgc cttcccgctg
9009001 cggaccatct cctccgagaa ggaagatggc cgacccggag atatcccggt tcccgtacaa
9009061 ggagcttcca tacatgccag ggtctacgac cacgccgggt tggacgggtg ctcgcgtttg
9009121 cgcactcgcc catattgcct tccgctcttt ggacagcgtc ggctcccgag ataacactgt
9009181 ttcgcggctc aatggctggc ctgcatgctc ccctaccgac gcttcgccga caccctcgcg
9009241 gacgcctgcg cacggctcgg ggccgatgtg gttcgctaca ccttcatcgc aatggacttc
9009301 caccatctat tccttgccgg tctcccggcg cacccaaagt agtgataggg cttcaatatc
9009361 gctgcgcgtg cgattgtaga cgatgagatg atggctagcc tttagcaggt tccgcgccat
9009421 tggcgcaccc atgtggccaa gcccgatgaa gccgaggtcc atcgcaggca tcgtcaacta
9009481 atcgatcgcc gagctgaagg aggcgagtct cagaggtcga gagtcggcga tagcgcttgt
9009541 cctggagatc tcgcgccaag tcgcaaaggc tcgttcgcgc gaagctcgac ggaagtcggc
9009601 cgtgacggct ccgggatagg ggatgtggaa aaggttcgcg acctgatcgt gaactgacag
9009661 aaaccgttga gcctgatggg gacgatttta aacgcttcat gatccgctcg cgtcgccgcg

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[ORF sequence]

Frame shift Mutation. See ORF for B.j.I2-1.

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[Secondary structure]

Same as B.j.I2-1.

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