Br.sp.I1

Sequence from Genbank entry (intron is on the antisense strand).

The boundaries of the intron are marked as red and ORF is marked

as blue, with start and stop codons underlined.

Intron on antisense strand

3' end

atc gggatagggg ggagtctcgc gactcctccc
902581 ctcccacacc accgtacgta cgggtcacgt atacggcggt tcgacagatt gaacggttca
902641 gcggggtgcg aggtagggca atccgcgtga ggcgaagaag acgtttggca gagccatggt
902701 cagcccggca ctgttcgcca gccgccaagg gccacgtggg ttgccggcgg ttttgagcgc
902761 cagctcccgg ccaacgccgc agcgttgcag ctcgtcgaag cgagtacgac cctgcttcca
902821 ttgggtccag acgacggcgc gcaaccgccg cctgatccac tcatccagct tgcgcaacac
902881 cgacggtgtc tcgcagaacc cgaagtagcc gcgccatccc ttcaggtaca gcgacagctt
902941 ctcgatgatc tgcgcgaggc ttcgaccaga ttgtcgcccc gtcagttccc gaactctggc
903001 cttgcagcgg gcgatcgcct cgggcgcgat gcgccgacgc ggctttctcc cctgggtaaa
903061 gctgaagccc aggaacttgc ggtggttcgg tctggcgacc gcgctcttgg ccctgttcac
903121 cttgagcttg aggcaccgtt ccaggaacgt ctcgatgctc gccatcaccc gctcgcccgc
903181 ctttcgactg cgcacataga tgttgcagtc gtcggcatag cgcacgaagc gatgacctcg
903241 cctctccagc tccttgtcca gcacgtccag catcaggttc gacagcagcg gcgagagcgg
903301 cccgccttgc ggcgcgcctt cctccgtcgg gctgaccagc cctccctcca gcacacccgc
903361 agtcaagaag ccgcggatca gcttcagaag acgcttgtca gcgacccgtt tggcaaccag
903421 ccccatcagg atgtcgtggt tgacccggtc gaagaacttc tccaggtcga tatccaccac
903481 gatgcggtgc cgggacgcaa tgtacgcctg cgccttcgtc accgcctgat gcgccgagcg
903541 gcctggcctg aagccgtagc tcgcgtcgga gaacgtccgg tcccattcgc cctgcaacac
903601 ctgcaacacc gcctgctgga tgaagcggtc gacaaccgtc gggatgccga gcagccgaac
903661 gccacccgat gccttcggga tctcgacacg ccgcaccgcc tgcggtttgt aggtgccgtc
903721 gagcagctga gcccggatcg tgagccagtt cgccttcagg taggtcggca gatcgtccac
903781 ggtcatcccg tcgacacccg ccgccccctt gttgcgcttc actcggtcca atgccttctt
903841 caggttctca cgtgcgacga tcctttccat cgacggtccc acgaccgccg ggcgttcgag
903901 acaggtcaac gccgcacgag cttcggcctc cccggcgccg gcacgcgggg cttcacccct
903961 cggtccgagg cgagggttca gattgctctg atcttccggc cgcattggat cgtgcgagat
904021 caccgctcta ctgacccctt ccatcgtttg ggcctttagc ggcacgctac cgcctactac
904081 gccctctgct gacttctgcg ccgcgatccg gccgccttac gacgacctca gtcccgttgg
904141 gacacgacac agatctcccg aggtaagacc gaccgccttc accgcatacc cgtcggattt
904201 accaccccgc cccttgatga ccgtggactt cgcgattggc agctcgctcg tccggacggg
904261 taggcctcgc atccgctgtt tgttcatcgg gccgcggctt tgctccacgc tgtcttcaga
904321 ccccacctcg cgatgacgcc cttgcgcttc gctaatcctt cgccgtcatc aggctggata
904381 gaggacttcc acctccaagc tgtcgttcat actcggcaca c

5' end

Intron on sense strand

5' end

1 gtgtgccgag tatgaacgac agcttggagg tggaagtcct ctatccagcc tgatgacggc

61 gaaggattag cgaagcgcaa gggcgtcatc gcgaggtggg gtctgaagac agcgtggagc

121 aaagccgcgg cccgatgaac aaacagcgga tgcgaggcct acccgtccgg acgagcgagc

181 tgccaatcgc gaagtccacg gtcatcaagg ggcggggtgg taaatccgac gggtatgcgg

241 tgaaggcggt cggtcttacc tcgggagatc tgtgtcgtgt cccaacggga ctgaggtcgt

301 cgtaaggcgg ccggatcgcg gcgcagaagt cagcagaggg cgtagtaggc ggtagcgtgc

361 cgctaaaggc ccaaacgatg gaaggggtca gtagagcggt gatctcgcac gatccaatgc

421 ggccggaaga tcagagcaat ctgaaccctc gcctcggacc gaggggtgaa gccccgcgtg

481 ccggcgccgg ggaggccgaa gctcgtgcgg cgttgacctg tctcgaacgc ccggcggtcg

541 tgggaccgtc gatggaaagg atcgtcgcac gtgagaacct gaagaaggca ttggaccgag

601 tgaagcgcaa caagggggcg gcgggtgtcg acgggatgac cgtggacgat ctgccgacct

661 acctgaaggc gaactggctc acgatccggg ctcagctgct cgacggcacc tacaaaccgc

721 aggcggtgcg gcgtgtcgag atcccgaagg catcgggtgg cgttcggctg ctcggcatcc

781 cgacggttgt cgaccgcttc atccagcagg cggtgttgca ggtgttgcag ggcgaatggg

841 accggacgtt ctccgacgcg agctacggct tcaggccagg ccgctcggcg catcaggcgg

901 tgacgaaggc gcaggcgtac attgcgtccc ggcaccgcat cgtggtggat atcgacctgg

961 agaagttctt cgaccgggtc aaccacgaca tcctgatggg gctggttgcc aaacgggtcg

1021 ctgacaagcg tcttctgaag ctgatccgcg gcttcttgac tgcgggtgtg ctggagggag

1081 ggctggtcag cccgacggag gaaggcgcgc cgcaaggcgg gccgctctcg ccgctgctgt

1141 cgaacctgat gctggacgtg ctggacaagg agctggagag gcgaggtcat cgcttcgtgc

1201 gctatgccga cgactgcaac atctatgtgc gcagtcgaaa ggcgggcgag cgggtgatgg

1261 cgagcatcga gacgttcctg gaacggtgcc tcaagctcaa ggtgaacagg gccaagagcg

1321 cggtcgccag accgaaccac cgcaagttcc tgggcttcag ctttacccag gggagaaagc

1381 cgcgtcggcg catcgcgccc gaggcgatcg cccgctgcaa ggccagagtt cgggaactga

1441 cggggcgaca atctggtcga agcctcgcgc agatcatcga gaagctgtcg ctgtacctga

1501 agggatggcg cggctacttc gggttctgcg agacaccgtc ggtgttgcgc aagctggatg

1561 agtggatcag gcggcggttg cgcgccgtcg tctggaccca atggaagcag ggtcgtactc

1621 gcttcgacga gctgcaacgc tgcggcgttg gccgggagct ggcgctcaaa accgccggca

1681 acccacgtgg cccttggcgg ctggcgaaca gtgccgggct gaccatggct ctgccaaacg

1741 tcttcttcgc ctcacgcgga ttgccctacc tcgcaccccg ctgaaccgtt caatctgtcg

1801 aaccgccgta tacgtgaccc gtacgtacgg tggtgtggga ggggaggagt cgcgagactc

1861 ccccctatcc cgat

3' end

[top]

[Intron and flanking sequence]

902161 gcggatcgag gcgaaggaag tcgcgcacga gtctctacat cgcgaacgcc gcacttgcct
902221 ctcccgagga attgcgcccc accgccaggc ccccagcgcg atcccggtcg cgaagcacga
902281 ccggctgctc caatctccgt cattgcgagg agcgaagcga cgaagcaatc cagagtccca
902341 ccccgtcccc tggattgctt cgccgcgctc gcaatgacgc ttgcggcagc attcaactcg
902401 agaagctcac acgacatctg cggatgcgcc ttgtacggac catgcggaca aaccctcgcg
902461 atctcgcagc gcctcgcgcc cgagctatga gccattctca ccgccctctt ccaaactgag
902521 ggcgcaggga aggccgggcg ctggccgatc gggatagggg ggagtctcgc gactcctccc
902581 ctcccacacc accgtacgta cgggtcacgt atacggcggt tcgacagatt gaacggttca
902641 gcggggtgcg aggtagggca atccgcgtga ggcgaagaag acgtttggca gagccatggt
902701 cagcccggca ctgttcgcca gccgccaagg gccacgtggg ttgccggcgg ttttgagcgc
902761 cagctcccgg ccaacgccgc agcgttgcag ctcgtcgaag cgagtacgac cctgcttcca
902821 ttgggtccag acgacggcgc gcaaccgccg cctgatccac tcatccagct tgcgcaacac
902881 cgacggtgtc tcgcagaacc cgaagtagcc gcgccatccc ttcaggtaca gcgacagctt
902941 ctcgatgatc tgcgcgaggc ttcgaccaga ttgtcgcccc gtcagttccc gaactctggc
903001 cttgcagcgg gcgatcgcct cgggcgcgat gcgccgacgc ggctttctcc cctgggtaaa
903061 gctgaagccc aggaacttgc ggtggttcgg tctggcgacc gcgctcttgg ccctgttcac
903121 cttgagcttg aggcaccgtt ccaggaacgt ctcgatgctc gccatcaccc gctcgcccgc
903181 ctttcgactg cgcacataga tgttgcagtc gtcggcatag cgcacgaagc gatgacctcg
903241 cctctccagc tccttgtcca gcacgtccag catcaggttc gacagcagcg gcgagagcgg
903301 cccgccttgc ggcgcgcctt cctccgtcgg gctgaccagc cctccctcca gcacacccgc
903361 agtcaagaag ccgcggatca gcttcagaag acgcttgtca gcgacccgtt tggcaaccag
903421 ccccatcagg atgtcgtggt tgacccggtc gaagaacttc tccaggtcga tatccaccac
903481 gatgcggtgc cgggacgcaa tgtacgcctg cgccttcgtc accgcctgat gcgccgagcg
903541 gcctggcctg aagccgtagc tcgcgtcgga gaacgtccgg tcccattcgc cctgcaacac
903601 ctgcaacacc gcctgctgga tgaagcggtc gacaaccgtc gggatgccga gcagccgaac
903661 gccacccgat gccttcggga tctcgacacg ccgcaccgcc tgcggtttgt aggtgccgtc
903721 gagcagctga gcccggatcg tgagccagtt cgccttcagg taggtcggca gatcgtccac
903781 ggtcatcccg tcgacacccg ccgccccctt gttgcgcttc actcggtcca atgccttctt
903841 caggttctca cgtgcgacga tcctttccat cgacggtccc acgaccgccg ggcgttcgag
903901 acaggtcaac gccgcacgag cttcggcctc cccggcgccg gcacgcgggg cttcacccct
903961 cggtccgagg cgagggttca gattgctctg atcttccggc cgcattggat cgtgcgagat
904021 caccgctcta ctgacccctt ccatcgtttg ggcctttagc ggcacgctac cgcctactac
904081 gccctctgct gacttctgcg ccgcgatccg gccgccttac gacgacctca gtcccgttgg
904141 gacacgacac agatctcccg aggtaagacc gaccgccttc accgcatacc cgtcggattt
904201 accaccccgc cccttgatga ccgtggactt cgcgattggc agctcgctcg tccggacggg
904261 taggcctcgc atccgctgtt tgttcatcgg gccgcggctt tgctccacgc tgtcttcaga
904321 ccccacctcg cgatgacgcc cttgcgcttc gctaatcctt cgccgtcatc aggctggata
904381 gaggacttcc acctccaagc tgtcgttcat actcggcaca ccgcccgtgg cccgctgcgg
904441 aaaaaaatgc aggcggcagt caccacaggt ctggccgaaa acgcccggcc ctccctgcgc
904501 gatggcctta cgaattatac gcgctctccc tggggatcgg ctgtcttgcc cccatcaccc
904561 gcaggccgct catcagcaac gcccacacgc ttgacctcag caccgggagg ccaggaccac
904621 gcgatttcac cgtgcgccgg agatcgttcg tcggcacggc gaaccatgct gcgaccccaa
904681 agcgcccatc gcatcccaca cccgacgtcc gtgacgaccg cgaagcgtcc cctcgttggg
904741 gcgggacgca gcggagtaaa gcacgatttc tgtaaaaacg aaagatgatt tttggcgaag

[top]

[ORF sequence]

MERIVARENLKKALDRVKRNKGAAGVDGMTVDDLPTYLKANWLTIRAQLLDGTYKPQA

VRRVEIPKASGGVRLLGIPTVVDRFIQQAVLQVLQGEWDRTFSDASYGFRPGRSAHQA

VTKAQAYIASRHRIVVDIDLEKFFDRVNHDILMGLVAKRVADKRLLKLIRGFLTAGVL

EGGLVSPTEEGAPQGGPLSPLLSNLMLDVLDKELERRGHRFVRYADDCNIYVRSRKAG

ERVMASIETFLERCLKLKVNRAKSAVARPNHRKFLGFSFTQGRKPRRRIAPEAIARCK

ARVRELTGRQSGRSLAQIIEKLSLYLKGWRGYFGFCETPSVLRKLDEWIRRRLRAVVW

TQWKQGRTRFDELQRCGVGRELALKTAGNPRGPWRLANSAGLTMALPNVFFASRGLPY

LAPR

[top]

[Secondary structure]

[top]