D.h.I6

Sequence from Genbank entry (intron is on the antisense strand).

The boundaries of the intron are marked as red and ORF is marked

as blue, with start and stop codons underlined.

Intron on antisense strand

3' end

atcgggtag
5169121 gaggccaccc attatttgag cggccgacct cccacagcac cgtacgtacc gttcggtata
5169181 cggcgcttcc aaagtttaca ctttacttca cagaataata ttcaataaag ctgagatatc
5169241 cggctcgttt aaagcgttca ttggataggg cttgcatcag aattgggcta ttggcgactc
5169301 gccaatagcc ttttcttgtg tttgcccaca tccatgcttt ctgttttggt atacctaatt
5169361 tctttaggtt ctcaaaccga gttcggattt tcttccatcg cttccaagtc accattctaa
5169421 tgcggcttct tacccatcca tctaagctct caagtagttt tctcgcgtcg gctagtttaa
5169481 aatagttggt ccagcctctt acgatttggt taagcttgtt tcttctttcc tcaattccca
5169541 ttccattgct tcgtccggtt acttctcgaa ttttatcctt aagcttctga atgcttttcg
5169601 gatgaatctt taagcgtcct tcgcctttgt aaatgtaaaa gccgtatcct agaaacttga
5169661 ccttatttac atatgctacc gtggtcttct ccctatttac tttgaggaat agctttcctt
5169721 caatgaatgg gaggatatgc tctagagtcc gacttgctgc tttcttgctc ttgcagaaaa
5169781 tcatcatgtc atctgcatag cgcacaaacc gatgtcctct tctttccaac tcatggtcgc
5169841 attcgtttaa cattatgttg ccaagtatcg gacttaaggg cccaccttgt ggtacgccct
5169901 ctaagctttc ctcgaataat ccctttacca tgactccggc tcttaaaaat ttatggatta
5169961 gagagattac tctcccgtcc tttattgtct ccgacagtat ttggatgagc ttgctttggt
5170021 tgaccgtatc gaagtatttc tctaagtcca tatccactac ataaacgtag ccatcagtaa
5170081 tgttcttctg gcatctgcgt agggcgtcat gggcacttcg gttgggtcta aaaccaaagc
5170141 tgttatctga gaattgtttc tcgaagatgg ggctcaatac ttgggttatg gcctgttgaa
5170201 taagtctgtc tacgacggtt ggtattccta gctttcttgt tttcccgttc tcttttggta
5170261 tttctaccct tcttacgggt tggggtctgt atttcccctc cagaatggat ttcacgagtt
5170321 cctccttgtg gtctttcaga aagtgtgaaa gttcattcac ctgcataccg tcaattccac
5170381 cagcgccttt gttcctcttc acctgtttgt aggctttgtc tatattggcg tcgcttagga
5170441 tttgctcaag tagtccctct gtctgcttgt ttgtgttggt gttgtcggtt tcagccatct
5170501 ttggtggcgc gcacacttct gcatactctc tctgttccgc agataccatt tgcagatagt
5170561 cttcaaaaga aagttgtctg tgttttaaat tgccacttcc agtgactttc attgacccac
5170621 acctcctttg gttcggccct tccttcggtg tctagaacac ctccgtacta tggcttctgc
5170681 tgactcctca cgataaatct tgtttcaacc aggcttctta ctctgtttcc acctgtccgt
5170741 gaggcctccc acggtaagac gattcacttt cattccatat acccgcaaca tttacgctga
5170801 catgtccgtg cagcttttgg gctttgactt gtttcgcagt ctcaccccac gtttcgcgcc
5170861 tgatgttgtt cgtgttcctc gggccggaac tttgccgccg gtttccttca gattccacct
5170921 cgcgatggac acccttacct tgagctaatg gttggtcgct gcataccccc ataacggact
5170981 ttcaccgtct agttaatcgc catgcgtggc gcac

5' end

Intron on sense strand

5' end

1 gtgcgccacg catggcgatt aactagacgg tgaaagtccg ttatgggggt atgcagcgac

61 caaccattag ctcaaggtaa gggtgtccat cgcgaggtgg aatctgaagg aaaccggcgg

121 caaagttccg gcccgaggaa cacgaacaac atcaggcgcg aaacgtgggg tgagactgcg

181 aaacaagtca aagcccaaaa gctgcacgga catgtcagcg taaatgttgc gggtatatgg

241 aatgaaagtg aatcgtctta ccgtgggagg cctcacggac aggtggaaac agagtaagaa

301 gcctggttga aacaagattt atcgtgagga gtcagcagaa gccatagtac ggaggtgttc

361 tagacaccga aggaagggcc gaaccaaagg aggtgtgggt caatgaaagt cactggaagt

421 ggcaatttaa aacacagaca actttctttt gaagactatc tgcaaatggt atctgcggaa

481 cagagagagt atgcagaagt gtgcgcgcca ccaaagatgg ctgaaaccga caacaccaac

541 acaaacaagc agacagaggg actacttgag caaatcctaa gcgacgccaa tatagacaaa

601 gcctacaaac aggtgaagag gaacaaaggc gctggtggaa ttgacggtat gcaggtgaat

661 gaactttcac actttctgaa agaccacaag gaggaactcg tgaaatccat tctggagggg

721 aaatacagac cccaacccgt aagaagggta gaaataccaa aagagaacgg gaaaacaaga

781 aagctaggaa taccaaccgt cgtagacaga cttattcaac aggccataac ccaagtattg

841 agccccatct tcgagaaaca attctcagat aacagctttg gttttagacc caaccgaagt

901 gcccatgacg ccctacgcag atgccagaag aacattactg atggctacgt ttatgtagtg

961 gatatggact tagagaaata cttcgatacg gtcaaccaaa gcaagctcat ccaaatactg

1021 tcggagacaa taaaggacgg gagagtaatc tctctaatcc ataaattttt aagagccgga

1081 gtcatggtaa agggattatt cgaggaaagc ttagagggcg taccacaagg tgggccctta

1141 agtccgatac ttggcaacat aatgttaaac gaatgcgacc atgagttgga aagaagagga

1201 catcggtttg tgcgctatgc agatgacatg atgattttct gcaagagcaa gaaagcagca

1261 agtcggactc tagagcatat cctcccattc attgaaggaa agctattcct caaagtaaat

1321 agggagaaga ccacggtagc atatgtaaat aaggtcaagt ttctaggata cggcttttac

1381 atttacaaag gcgaaggacg cttaaagatt catccgaaaa gcattcagaa gcttaaggat

1441 aaaattcgag aagtaaccgg acgaagcaat ggaatgggaa ttgaggaaag aagaaacaag

1501 cttaaccaaa tcgtaagagg ctggaccaac tattttaaac tagccgacgc gagaaaacta

1561 cttgagagct tagatggatg ggtaagaagc cgcattagaa tggtgacttg gaagcgatgg

1621 aagaaaatcc gaactcggtt tgagaaccta aagaaattag gtataccaaa acagaaagca

1681 tggatgtggg caaacacaag aaaaggctat tggcgagtcg ccaatagccc aattctgatg

1741 caagccctat ccaatgaacg ctttaaacga gccggatatc tcagctttat tgaatattat

1801 tctgtgaagt aaagtgtaaa ctttggaagc gccgtatacc gaacggtacg tacggtgctg

1861 tgggaggtcg gccgctcaaa taatgggtgg cctcctaccc gat

3' end

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[Intron and flanking sequence]

5168821 agggcagtat ctttgacgct accccggccg gactgatatt cgatggcaca ctcaaatgcc
5168881 gagaccacca gtccgataac atagagcgcc caggcgagat aaacaaaaaa caggataatg
5168941 aactggaccc agctcatctc aaagaggtcg gcgcccatgt tgcccatctc ggcaaagaag
5169001 ttgccaagga agccgatgag ttgtccatag atccagtcga ggatctgttc caacacggca
5169061 tcggccgcaa agtcccagat aaacacggcc attccctccc ttttgaacat aatcgggtag
5169121 gaggccaccc attatttgag cggccgacct cccacagcac cgtacgtacc gttcggtata
5169181 cggcgcttcc aaagtttaca ctttacttca cagaataata ttcaataaag ctgagatatc
5169241 cggctcgttt aaagcgttca ttggataggg cttgcatcag aattgggcta ttggcgactc
5169301 gccaatagcc ttttcttgtg tttgcccaca tccatgcttt ctgttttggt atacctaatt
5169361 tctttaggtt ctcaaaccga gttcggattt tcttccatcg cttccaagtc accattctaa
5169421 tgcggcttct tacccatcca tctaagctct caagtagttt tctcgcgtcg gctagtttaa
5169481 aatagttggt ccagcctctt acgatttggt taagcttgtt tcttctttcc tcaattccca
5169541 ttccattgct tcgtccggtt acttctcgaa ttttatcctt aagcttctga atgcttttcg
5169601 gatgaatctt taagcgtcct tcgcctttgt aaatgtaaaa gccgtatcct agaaacttga
5169661 ccttatttac atatgctacc gtggtcttct ccctatttac tttgaggaat agctttcctt
5169721 caatgaatgg gaggatatgc tctagagtcc gacttgctgc tttcttgctc ttgcagaaaa
5169781 tcatcatgtc atctgcatag cgcacaaacc gatgtcctct tctttccaac tcatggtcgc
5169841 attcgtttaa cattatgttg ccaagtatcg gacttaaggg cccaccttgt ggtacgccct
5169901 ctaagctttc ctcgaataat ccctttacca tgactccggc tcttaaaaat ttatggatta
5169961 gagagattac tctcccgtcc tttattgtct ccgacagtat ttggatgagc ttgctttggt
5170021 tgaccgtatc gaagtatttc tctaagtcca tatccactac ataaacgtag ccatcagtaa
5170081 tgttcttctg gcatctgcgt agggcgtcat gggcacttcg gttgggtcta aaaccaaagc
5170141 tgttatctga gaattgtttc tcgaagatgg ggctcaatac ttgggttatg gcctgttgaa
5170201 taagtctgtc tacgacggtt ggtattccta gctttcttgt tttcccgttc tcttttggta
5170261 tttctaccct tcttacgggt tggggtctgt atttcccctc cagaatggat ttcacgagtt
5170321 cctccttgtg gtctttcaga aagtgtgaaa gttcattcac ctgcataccg tcaattccac
5170381 cagcgccttt gttcctcttc acctgtttgt aggctttgtc tatattggcg tcgcttagga
5170441 tttgctcaag tagtccctct gtctgcttgt ttgtgttggt gttgtcggtt tcagccatct
5170501 ttggtggcgc gcacacttct gcatactctc tctgttccgc agataccatt tgcagatagt
5170561 cttcaaaaga aagttgtctg tgttttaaat tgccacttcc agtgactttc attgacccac
5170621 acctcctttg gttcggccct tccttcggtg tctagaacac ctccgtacta tggcttctgc
5170681 tgactcctca cgataaatct tgtttcaacc aggcttctta ctctgtttcc acctgtccgt
5170741 gaggcctccc acggtaagac gattcacttt cattccatat acccgcaaca tttacgctga
5170801 catgtccgtg cagcttttgg gctttgactt gtttcgcagt ctcaccccac gtttcgcgcc
5170861 tgatgttgtt cgtgttcctc gggccggaac tttgccgccg gtttccttca gattccacct
5170921 cgcgatggac acccttacct tgagctaatg gttggtcgct gcataccccc ataacggact
5170981 ttcaccgtct agttaatcgc catgcgtggc gcacaaaata gggagcctga attctgcagg
5171041 ctcccgaata tttgtatacg ctacatgcca agagtcaggt gatattgagt aagagctttg
5171101 gcaaggagct gtaacatatg gtacgatatt gacaaacagg aatttgtcag gggatatgat
5171161 gatggatatt agacgattgg tcaatcaatt tcgaaatgct atagatgtag ctaaggatgc
5171221 aggggagttt gacaaggact ttgcatttta caaattcccg cgtggatgct gtggtgatac
5171281 ttgtgatttg ttagctcagt ttttgttgga aaacggtatc agaacatatt atttctgcgg
5171341 tacatataga gatggttcat ttgaaaatgt tcagtcccat gcatggttat tgacggataa

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[ORF sequence]

MCAPPKMAETDNTNTNKQTEGLLEQILSDANIDKAYKQVKRNKGAGGIDGMQVNELSH

FLKDHKEELVKSILEGKYRPQPVRRVEIPKENGKTRKLGIPTVVDRLIQQAITQVLSP

IFEKQFSDNSFGFRPNRSAHDALRRCQKNITDGYVYVVDMDLEKYFDTVNQSKLIQIL

SETIKDGRVISLIHKFLRAGVMVKGLFEESLEGVPQGGPLSPILGNIMLNECDHELER

RGHRFVRYADDMMIFCKSKKAASRTLEHILPFIEGKLFLKVNREKTTVAYVNKVKFLG

YGFYIYKGEGRLKIHPKSIQKLKDKIREVTGRSNGMGIEERRNKLNQIVRGWTNYFKL

ADARKLLESLDGWVRSRIRMVTWKRWKKIRTRFENLKKLGIPKQKAWMWANTRKGYWR

VANSPILMQALSNERFKRAGYLSFIEYYSVK

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[Secondary structure]

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