D.h.I7-1

Note: Redundant intron copies found in

AP008230 Desulfitobacterium hafniense Y51 genomic DNA (53953-51435)

AP008230 Desulfitobacterium hafniense Y51 genomic DNA (5284217-5286735)

[Intron sequence]

Sequence from Genbank entry (intron is on the antisense strand).

The boundaries of the intron are marked as red and ORF is marked

as blue, with start and stop codons underlined.

Intron on antisense strand

3' end

gtg ggctaagtgc ccagcgcctt accatattcc tatggcaggt

6901 ttccgaacac tcgcctccga accgtgcttg cacctctcga tgcacacggc tctccacttg

6961 ttaattcagt tttccagagt gtaacttttc gtgacagtct aagcagagcg ccagcgtctt

7021 gcggtttctc gcaatcataa agcgctccca atagctttta cctttcaggt ctttgagctt

7081 cctgacatgg tgaatttcaa tctcacagtc agttttgccg catagctcgc attgccctgc

7141 ggacagcctt gccatcaagc ttgttttact ggaatacatc acagtttggg gaataacgtc

7201 tacaacggca tttttctgca aaggctttct tgcgaaaccc tcattgtaaa acagccgtgt

7261 tttggccttt ccctttttat cggtgaagcg tactccaaag ttcttaccag tacgcagttt

7321 ttcaatcatt ctgcgcatgg tggtgcgata ttttgtcgca aaggttttga acatactgta

7381 ctgcatgata tagccgaaag agctggcaaa agaggcattg ttggcaatac ggtagtaatt

7441 gcggaagccc ctgatttcac tgttgtactg gtcaaggatt tcgaggtcgt cgttatcctt

7501 gaggtagtac cgggctttcg ctttccagtt gtctttgcca tagaccgttt tttcaatggt

7561 catagcactg tattccaata gctttttacg cataagctcc gttggcattt ccaaacagac

7621 agtgccgttc aggtggcggc agagccgccc tgtcttatcc tttttggtag cggcagaacg

7681 ccgtacataa atgtcatacc ccaaaaacct tgctcttttt tcggaatggg ttatcagcgt

7741 tttttcatct gacagctcta agatcagcgt gtcagcaaca aaagccttta cctgttcctt

7801 tattgcgatt gcgtcctctt tactaccgat aacgccgata agaaaatcat cagcataacg

7861 gacatattga agccgcttaa agctggtatc aaacgggtcg gaataaggaa tcgtcagctt

7921 tttacggtca atctcacgaa ttttctctgt gagcacctgc ttttcttcct ctgaattggt

7981 gttgcgcaat ttcttggcaa gcaccccacg ttttttctcc agctcatagg tttcaggata

8041 gacagcacgg acagctcctt tatcaaaccg ctttttcagt tcctccatat acctgtccaa

8101 tttatccaga tagatgttgg caagaatggg actgatgata cctccctgcg gcgttccgct

8161 gtaggtgtta tggtactgcc agtcctctaa atatcctgcc tttagaaact tgcggataag

8221 gcgcagaaag cgctcatctt tgatatgctc cgctaaaatc cctatcataa cttcgtggtt

8281 gatgttgtca aagaagcctt taatatctcc ctcaacaaac cactttacac cagtaaagca

8341 gacttgcact tggctaagcg cggtgtggca gctatgattc gggcgaaagc cgtgcgaagt

8401 tttcgcaaaa ctgccctcat atactgcttc cagcaggagc ctcacacatt cctgtaccag

8461 cttatcgtca aaagacggga ttcccaatgg acgcagtttt ccgtttttct tcgggatata

8521 ggttcttctt gatggttgtg gctgatagct ctcgtccttt aggctcgcaa taatgccgtc

8581 aatgcgattt aggctcattg cgtcgatggt tttgccatcg gtgccttttg tcatattccc

8641 ttggctggca tagatattct gataagccag caaaaacagc tcacggttat acagattgcg

8701 gtagagccgt tcaaaggtat acgacttgtc actgctatgg ttctgcaaac tgcttaacat

8761 attgattgga tttctcatgg tgtatcacac accttccttt ctctattgtt aagataacaa

8821 gctgccgccc tttgccatgt atgcggcgtt accgcactcg gactactacg gcggctccgt

8881 tgccataccg aatattcagc gtcatctttc ttggctaagc cttgaaattt atcaccacaa

8941 gggcattacg catagcagga tttccggcgt ttcgggttag gcaatccccg tttagcaaag

9001 taataatggc gtagatgatt gtcggatagc gtttccgtcc ttttctccat acggagttga

9061 gccgcacaga agctcgccca catatactcg actaatgcat tgtggctgtg cggtatggcg

9121 atagctgtct ttcgccaaag ttcctacata aacctctcgg actgcgcttc aggcagtatg

9181 gcttttatcc tcatatcatc tgtttcatct tcccattcag tcgtaggctg acaactgccc

9241 aactcatggg tttaccggtg tgctattttc ccctatgagg tttccctctc aggtaagccg

9301 gttgatgacg ggcaaatgag cttttacccg ctggattgcc aaatccagaa ttattacatc

9361 gccgttacgg gcgcac

5' end

Intron on sense strand

5' end

gtgcg cccgtaacgg cgatgtaata attctggatt

3661 tggcaatcca gcgggtaaaa gctcatttgc ccgtcatcaa ccggcttacc tgagagggaa

3721 acctcatagg ggaaaatagc acaccggtaa acccatgagt tgggcagttg tcagcctacg

3781 actgaatggg aagatgaaac agatgatatg aggataaaag ccatactgcc tgaagcgcag

3841 tccgagaggt ttatgtagga actttggcga aagacagcta tcgccatacc gcacagccac

3901 aatgcattag tcgagtatat gtgggcgagc ttctgtgcgg ctcaactccg tatggagaaa

3961 aggacggaaa cgctatccga caatcatcta cgccattatt actttgctaa acggggattg

4021 cctaacccga aacgccggaa atcctgctat gcgtaatgcc cttgtggtga taaatttcaa

4081 ggcttagcca agaaagatga cgctgaatat tcggtatggc aacggagccg ccgtagtagt

4141 ccgagtgcgg taacgccgca tacatggcaa agggcggcag cttgttatct taacaataga

4201 gaaaggaagg tgtgtgatac accatgagaa atccaatcaa tatgttaagc agtttgcaga

4261 accatagcag tgacaagtcg tatacctttg aacggctcta ccgcaatctg tataaccgtg

4321 agctgttttt gctggcttat cagaatatct atgccagcca agggaatatg acaaaaggca

4381 ccgatggcaa aaccatcgac gcaatgagcc taaatcgcat tgacggcatt attgcgagcc

4441 taaaggacga gagctatcag ccacaaccat caagaagaac ctatatcccg aagaaaaacg

4501 gaaaactgcg tccattggga atcccgtctt ttgacgataa gctggtacag gaatgtgtga

4561 ggctcctgct ggaagcagta tatgagggca gttttgcgaa aacttcgcac ggctttcgcc

4621 cgaatcatag ctgccacacc gcgcttagcc aagtgcaagt ctgctttact ggtgtaaagt

4681 ggtttgttga gggagatatt aaaggcttct ttgacaacat caaccacgaa gttatgatag

4741 ggattttagc ggagcatatc aaagatgagc gctttctgcg ccttatccgc aagtttctaa

4801 aggcaggata tttagaggac tggcagtacc ataacaccta cagcggaacg ccgcagggag

4861 gtatcatcag tcccattctt gccaacatct atctggataa attggacagg tatatggagg

4921 aactgaaaaa gcggtttgat aaaggagctg tccgtgctgt ctatcctgaa acctatgagc

4981 tggagaaaaa acgtggggtg cttgccaaga aattgcgcaa caccaattca gaggaagaaa

5041 agcaggtgct cacagagaaa attcgtgaga ttgaccgtaa aaagctgacg attccttatt

5101 ccgacccgtt tgataccagc tttaagcggc ttcaatatgt ccgttatgct gatgattttc

5161 ttatcggcgt tatcggtagt aaagaggacg caatcgcaat aaaggaacag gtaaaggctt

5221 ttgttgctga cacgctgatc ttagagctgt cagatgaaaa aacgctgata acccattccg

5281 aaaaaagagc aaggtttttg gggtatgaca tttatgtacg gcgttctgcc gctaccaaaa

5341 aggataagac agggcggctc tgccgccacc tgaacggcac tgtctgtttg gaaatgccaa

5401 cggagcttat gcgtaaaaag ctattggaat acagtgctat gaccattgaa aaaacggtct

5461 atggcaaaga caactggaaa gcgaaagccc ggtactacct caaggataac gacgacctcg

5521 aaatccttga ccagtacaac agtgaaatca ggggcttccg caattactac cgtattgcca

5581 acaatgcctc ttttgccagc tctttcggct atatcatgca gtacagtatg ttcaaaacct

5641 ttgcgacaaa atatcgcacc accatgcgca gaatgattga aaaactgcgt actggtaaga

5701 actttggagt acgcttcacc gataaaaagg gaaaggccaa aacacggctg ttttacaatg

5761 agggtttcgc aagaaagcct ttgcagaaaa atgccgttgt agacgttatt ccccaaactg

5821 tgatgtattc cagtaaaaca agcttgatgg caaggctgtc cgcagggcaa tgcgagctat

5881 gcggcaaaac tgactgtgag attgaaattc accatgtcag gaagctcaaa gacctgaaag

5941 gtaaaagcta ttgggagcgc tttatgattg cgagaaaccg caagacgctg gcgctctgct

6001 tagactgtca cgaaaagtta cactctggaa aactgaatta acaagtggag agccgtgtgc

6061 atcgagaggt gcaagcacgg ttcggaggcg agtgttcgga aacctgccat aggaatatgg

6121 taaggcgctg ggcacttagc ccac

3' end

[top]

[Intron and flanking sequence]

6541 tttggcttag atgccttggg tagtatgtgt cagccgagac taaacgggtt gtatcggaag

6601 attattaaat acatttagga atgtactata cgctttttta aagaggcgta ggacctaata

6661 aattacttat gtttagagac aatatcaata aattccaatt tatcgagcgg gctgactcct

6721 attgcgcgga gacagcctgc tcttttttgc ctacatccca agtatctgcc agatatacaa

6781 cggacaagtc agggcaaata ccaggcacgc aaacaatatg gccggcgcgg cccactcaaa

6841 ttgaccatgc ttgcggtgtg ggctaagtgc ccagcgcctt accatattcc tatggcaggt