[Back to introns by organism]  [Back to home page]

Information for Fr.sp.I4 intron  (Format of information for each intron) 

[Intron sequence]

[Intron and flanking sequence]

[ORF sequence]

[Secondary structure]

[Intron sequence]

Sequence from Genbank entry.  Intron is identified in red.  The ORF
is identified in blue with start and stop codons underlined.  

5' end

                                                                    gaa
65821 agcgccggga taaaccggca tggaggagga gatggaagag ctctgcgtcg aagggctagc
65881 gacccacggc gaccccgagt catgcgtcga cgtcccgcga gggcgtggcg aagcgttgac
65941 aggggcacgt gcaggccggg ctatggagcc gcgaaatgaa gcatccgggg tgcccacgct
66001 gtacaagagg cggaaggcca cactactggc ggcgctatcg cgagtcgtcg gtggaccctg
66061 cgcggtcaaa gaaccagggc atgtacggaa cctccatgcg cgagaaccgg gagatcccac
66121 gctcgcccgc ccggccgatc accgggtggg ccgttcaggg aacataaggt ggtacgcctg
66181 agatgcacga gcgtgggaag tcggatcgtc ttgtagtacc tgcgaacccg ccgaacaagg
66241 ccacagctgc ggaggtgggg gagggaaggg gacgagccaa ggggaacacg gacagtaaaa
66301 cgcatcccgg acacagcgcc ggaactgatg cgtccagtgc gctgggccgt gtgcgtgaag
66361 tggcacgacg ggacaggaac gcgcggttca ccgcgctgct gcaccatgtc acgctgggtc
66421 ggctccggga ggcgtatcgg gcgatcagcc cgaaagcggc tgctggggtg gacggggtga
66481 cgtggaccga ctacgggcag gacctggagg ccaatctgca ggatctgcac gtgcgggtgc
66541 agtcgggatg ttaccgggcg acaccgtcga ggcgggcgta cataccgaag gcggacgggc
66601 ggcttcggcc gctcgggatc gcctcgctgg aggacaagat tgttcagcgg gcggttgtcg
66661 aggtgctggg cgccgtctac gaggtggact tccggggctt ctcgtatggg ttccggccgg
66721 ggcggggtcc gcatgacgcg ttggacgccc tcgcggtcgg gatctggagg aagcgggtga
66781 actgggtgct cgacgcggac atccgcgact ttttcggcca gattgatcat tcctggctgc
66841 ggaggtttct ggagcaccgg atcgcggaca agcgggtcct gcggctgatc gacaagtggt
66901 tggccgcggg ggtcgtcgag gatggggagt ggacagcgtg tgaggaaggt tcgccacaag
66961 gggcgtcagt gtccccgctg ctggcgaacg tctacttgca ctatgtcctc gacctgtggg
67021 tcgactggtg gcggcgtcgc cacgcgcgcg gagatgtcat tgtcgtgcgc tgggccgacg
67081 acttcatcgt cgggttcgaa tacgaggagg atgcgcggcg gttcctggac gagctgcgcg
67141 aacggttcgc gaagttcggg ttggaactgc acccggataa gacgcggctg atcgagttcg
67201 ggcggtacgc cgcccgggat cggaagcggc ggggtctggg caagccggag acgttcgact
67261 ttctggggtt cacgcacatc tgtgcgacat cccggagggg gacgttctgg ctcaagcgca
67321 tcacgatcgc gaaacgcatg cgggcgaagc tgaaggcggt caatgagcag ctgaagcgtc
67381 gccggcatac gcccatcccg gatcagggac gctggttggc gagcgtgcta cgtgggcata
67441 tggcctacta cgccgtgccc ggcaacaccg acacgatgtc ggccttccgt acccaggtga
67501 cacggcactg gtgcaaggcg ctgcggcgcc gcagccaacg tgaccggatg aactggcaac
67561 ggatggggcg gatcgcggct cgatggctac ccccagtccg agtgatgcat cccttcccgg
67621 agagacgctt cgcagccaga acctgaggca ggagcccagt gcggtagtcc cgcacgctgg
67681 gatctgtgcg gggggccgcc cgcaagggcg gtccctaccg cgac

3' end

[top]

[Intron and flanking sequence]

65401 agcggcgctg ctcccggcgg gccgcctgtt ccggcgccag ctgttctgcg agtgcgtcca
65461 actcggtgat gctcatgccg gtcaggcgcg ggtgggccag cagcgtcagg gtcgctgccc
65521 ggtctgaacc ggtcgcggcg ttaacggcgg gtggggccgt gccgtcggtg tgtgtggggt
65581 ggattgtgta gttccatgtt ctgtgcatcg tgtggtgttc gatcggtagg gcatcgatgc
65641 gggctttgct gacggcgacg ccgatcggat agtccctggt gtccaggtgc gcttcgacac
65701 gtagtccgct gcgggttcgg gtcgccgcga tggtgttcac gacgacttcg tggctggtca
65761 gtggcctgcc tcgccagttc atggtgatct gggagaacaa tcgatgttcg attttgtgaa
65821 agcgccggga taaaccggca tggaggagga gatggaagag ctctgcgtcg aagggctagc
65881 gacccacggc gaccccgagt catgcgtcga cgtcccgcga gggcgtggcg aagcgttgac
65941 aggggcacgt gcaggccggg ctatggagcc gcgaaatgaa gcatccgggg tgcccacgct
66001 gtacaagagg cggaaggcca cactactggc ggcgctatcg cgagtcgtcg gtggaccctg
66061 cgcggtcaaa gaaccagggc atgtacggaa cctccatgcg cgagaaccgg gagatcccac
66121 gctcgcccgc ccggccgatc accgggtggg ccgttcaggg aacataaggt ggtacgcctg
66181 agatgcacga gcgtgggaag tcggatcgtc ttgtagtacc tgcgaacccg ccgaacaagg
66241 ccacagctgc ggaggtgggg gagggaaggg gacgagccaa ggggaacacg gacagtaaaa
66301 cgcatcccgg acacagcgcc ggaactgatg cgtccagtgc gctgggccgt gtgcgtgaag
66361 tggcacgacg ggacaggaac gcgcggttca ccgcgctgct gcaccatgtc acgctgggtc
66421 ggctccggga ggcgtatcgg gcgatcagcc cgaaagcggc tgctggggtg gacggggtga
66481 cgtggaccga ctacgggcag gacctggagg ccaatctgca ggatctgcac gtgcgggtgc
66541 agtcgggatg ttaccgggcg acaccgtcga ggcgggcgta cataccgaag gcggacgggc
66601 ggcttcggcc gctcgggatc gcctcgctgg aggacaagat tgttcagcgg gcggttgtcg
66661 aggtgctggg cgccgtctac gaggtggact tccggggctt ctcgtatggg ttccggccgg
66721 ggcggggtcc gcatgacgcg ttggacgccc tcgcggtcgg gatctggagg aagcgggtga
66781 actgggtgct cgacgcggac atccgcgact ttttcggcca gattgatcat tcctggctgc
66841 ggaggtttct ggagcaccgg atcgcggaca agcgggtcct gcggctgatc gacaagtggt
66901 tggccgcggg ggtcgtcgag gatggggagt ggacagcgtg tgaggaaggt tcgccacaag
66961 gggcgtcagt gtccccgctg ctggcgaacg tctacttgca ctatgtcctc gacctgtggg
67021 tcgactggtg gcggcgtcgc cacgcgcgcg gagatgtcat tgtcgtgcgc tgggccgacg
67081 acttcatcgt cgggttcgaa tacgaggagg atgcgcggcg gttcctggac gagctgcgcg
67141 aacggttcgc gaagttcggg ttggaactgc acccggataa gacgcggctg atcgagttcg
67201 ggcggtacgc cgcccgggat cggaagcggc ggggtctggg caagccggag acgttcgact
67261 ttctggggtt cacgcacatc tgtgcgacat cccggagggg gacgttctgg ctcaagcgca
67321 tcacgatcgc gaaacgcatg cgggcgaagc tgaaggcggt caatgagcag ctgaagcgtc
67381 gccggcatac gcccatcccg gatcagggac gctggttggc gagcgtgcta cgtgggcata
67441 tggcctacta cgccgtgccc ggcaacaccg acacgatgtc ggccttccgt acccaggtga
67501 cacggcactg gtgcaaggcg ctgcggcgcc gcagccaacg tgaccggatg aactggcaac
67561 ggatggggcg gatcgcggct cgatggctac ccccagtccg agtgatgcat cccttcccgg
67621 agagacgctt cgcagccaga acctgaggca ggagcccagt gcggtagtcc cgcacgctgg
67681 gatctgtgcg gggggccgcc cgcaagggcg gtccctaccg cgactccatt tcgacgtgcc
67741 gggcggaaaa tgacacacgg tgatcgtcag gccggtgtcg gcggcgagcg cggcgagttc
67801 ggctttccaa gctcgaaagc ggtagctatt cgacccgccc gcgtccgcgg tgaccagcag
67861 ccgggtggcc tgggggtagt cggcctggcc gcgggcctgc caccagcggc ggatcgaggc
67921 caccgcgaac gctgaggtgt cgtggtcgac cccgacgttg acccagccgg cgtcggtggt
67981 caggtcgtag acgccgtagg ggatggcggt gtcgccctgc gggccggtga agaagctgtg
68041 atcctcgacc tggacagggt cgcctttcgg tcgccattca cggcccgggt tcgggagctg

[top]

[ORF sequence]

MHERGKSDRLVVPANPPNKATAAEVGEGRGRAKGNTDSKTHPGHSAGTDASSALGRVR

EVARRDRNARFTALLHHVTLGRLREAYRAISPKAAAGVDGVTWTDYGQDLEANLQDLH

VRVQSGCYRATPSRRAYIPKADGRLRPLGIASLEDKIVQRAVVEVLGAVYEVDFRGFS

YGFRPGRGPHDALDALAVGIWRKRVNWVLDADIRDFFGQIDHSWLRRFLEHRIADKRV

LRLIDKWLAAGVVEDGEWTACEEGSPQGASVSPLLANVYLHYVLDLWVDWWRRRHARG

DVIVVRWADDFIVGFEYEEDARRFLDELRERFAKFGLELHPDKTRLIEFGRYAARDRK

RRGLGKPETFDFLGFTHICATSRRGTFWLKRITIAKRMRAKLKAVNEQLKRRRHTPIP

DQGRWLASVLRGHMAYYAVPGNTDTMSAFRTQVTRHWCKALRRRSQRDRMNWQRMGRI

AARWLPPVRVMHPFPERRFAART

[top]

[Secondary structure]

[top]

| Introduction | Intron secondary structure | Intron ORF structure | Introns listed by organism | Bacterial intron fragments | Alignment of insertion sequence |

| Phylogenetic tree of intron ORFs | How to find group II intron | Site map | Contact us |