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Information of G.v.I1 intron  (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

 

[intron sequence]

 

Sequence from Genbank entry (intron is on the antisense strand). 

The boundaries of the intron are marked as red and ORF is marked 

as blue, with start and stop codons underlined.

 

Intron on the antisense strand

               

3' end                                          

                a ttaaactcag ccgggcagtc gcccacccgg ctggtcttca aaaccggaca
168901 tgagactttc acctcatccg gctcctcgat gaccaggctc ttgtcatgag tacctctatc
168961 tcagtgccac tgttgcatcc attctgcgtc cgtcaacctt ttcttggatt tgtagggttg
169021 ataatcttcc agcagtgctt gccgtttggc ttgtagctga agacgttccg cttctgttat
169081 cctcgattgg gattgtaact gttggatgcg ctcagcggcg gttttctgat ggtggcaatg
169141 tcgatgaagt agctgcttat ttgatgaaat attccttccg ccgaatcgtt tcggcttccg
169201 gtgatccact tccagcaact ctccattcat gaaatacaac ccgcagtgag tgcacttgcc
169261 tgtctgggat ttcagcagtc gggctacttc cgcttttatt tgcggatgct gtcctatccg
169321 attactccag tacacccagt cgccatcgta cgggctacgg cgttctttca ccttgacgtg
169381 ccgagtaatc ggcctatctg agtgttgaac caggcgctta attccctccc ctttttggac
169441 ggcaaagcac cagttttgcg tgccaatcgt tagccagtat ttcctggcca gccatttctg
169501 actttggttg cgatgatgac tggttgccca agctttcaat tgcatgtaga gagtcctgtc
169561 cagcttcttg aacgtggctc cgctcacaac tttagagaag aaatgtgtcc atccccgaat
169621 tatcggattg aggtgctcaa tcaggaatga ttgaggctgt gccttatgtt tgtggattat
169681 tcttctcagc ttttcggtgt gagtcttgat gctcttcttg cttggtttga taatcgtttt
169741 gaagcccagg ggtttgccgc gactattcgt tcctgtatgg tacttgccaa cgggaaattg
169801 tcgaacggta aaccccagaa agtcgaaacc cggttgccct tcttctaaaa gaagagtgtg
169861 agctatccgt gttttgcttg gcttcaattc caatcccatg cctgccagcc attcctccag
169921 gaccgtctgg caactttgca ctatctgttg gtctgtgtgg atacacacaa aatcgtcagc
169981 atagcggatc agttgtgcca tcttggacac ctgtttgact cgttcttcca tgccatgtaa
170041 agcgatattc gctaacaggg gtgaaatcac gccgccttgg ggtgtgcctg tcggtgtggg
170101 gaatagttca ctaccttcca tcactcctgc tttcagccag gcgcgtattt gccgacggat
170161 agctgaggat gtgttcattt tcttgagcag tgcttgctgg tcgatgcggt cgaagcattt
170221 cgcgatatcg gcatcaagaa caaatttgct ttgttgccgt atcgcgttgt agatggcttg
170281 gagtgcatca tggcatgagc gtcctggtcg gaacccgtag ctgtttggct cgaagcgagc
170341 ttcccattca ggttccaggg cgagagtaag cagagcttgc cgcgccctgt ctgtcatcgt
170401 cgggatacca agagggcgtt tttcctgagt gccgggtttg gcaatccaga cccgtcgcat
170461 tggttttgcc ttctcgctta ttctcaggtt tttggtgagt gcaagtctcg cttttggggt
170521 gagggatttg actccatcaa ccccagctgt tttcttgccc tgattatcct gagtcaccct
170581 tcgtacggca agacatcttg ctgaccaaga acgtatcagt agtttctgga gtttacggac
170641 tgccttgaaa tcaccacgtt gcgaggcttt gaatatgcgt gtttgcagct tgaatactct
170701 gcgttggatt tgacgccaat tgagagaatt ccattccacc at
cgaagatt gctctcgtgt
170761 cttggatctg tgcactgcta ctggctccta ttcattcctg gtcatcgtgc ctacgtcagc
170821 atgtccctga cattactcag ggcattggct ttttaggcaa tctttcctgt cgcgagcatg
170881 cggttggcat ctgctcaggc atcgaccgag tcctgagaac tagcaacagg ttacttcgtt
170941 ccgattcacc attgattgaa tctgtagggt gatgctcatt tgccgggttt ttgtcgggag
171001 tacaaacagg tcgcatgtag aacgcctatc ccttatcctt cgccttttgg ctccagcctg
171061 tcagcccaat ttggctggtt aatcgtaacg gcaattaatg catctttgct ttcgctaccc
171121 gtggattctt gctgggcgag tttccaagct agggctatta gatatcgcct tttcatcccg
171181 ctttacggat tgatggccag tcgctaccgt agggatgatg ctgtcaccac tgtacctgcg
171241 gggagagact ttcactctca tgatgaatca gttgtcaagg tgtgtttgga gtatgaacct
171301 cctttcactt cttgccagtc atccttgaga tatcgctatc ccatttcgac tgaacgaatc
171361 gcac

5' end  

 

Intron on the sense strand

 

5' end  

   1 gtgcgattcg ttcagtcgaa atgggatagc gatatctcaa ggatgactgg caagaagtga 

  61 aaggaggttc atactccaaa cacaccttga caactgattc atcatgagag tgaaagtctc 

 121 tccccgcagg tacagtggtg acagcatcat ccctacggta gcgactggcc atcaatccgt 

 181 aaagcgggat gaaaaggcga tatctaatag ccctagcttg gaaactcgcc cagcaagaat 

 241 ccacgggtag cgaaagcaaa gatgcattaa ttgccgttac gattaaccag ccaaattggg 

 301 ctgacaggct ggagccaaaa ggcgaaggat aagggatagg cgttctacat gcgacctgtt 

 361 tgtactcccg acaaaaaccc ggcaaatgag catcacccta cagattcaat caatggtgaa 

 421 tcggaacgaa gtaacctgtt gctagttctc aggactcggt cgatgcctga gcagatgcca 

 481 accgcatgct cgcgacagga aagattgcct aaaaagccaa tgccctgagt aatgtcaggg 

 541 acatgctgac gtaggcacga tgaccaggaa tgaataggag ccagtagcag tgcacagatc 

 601 caagacacga gagcaatctt cgatggtgga atggaattct ctcaattggc gtcaaatcca 

 661 acgcagagta ttcaagctgc aaacacgcat attcaaagcc tcgcaacgtg gtgatttcaa 

 721 ggcagtccgt aaactccaga aactactgat acgttcttgg tcagcaagat gtcttgccgt 

 781 acgaagggtg actcaggata atcagggcaa gaaaacagct ggggttgatg gagtcaaatc 

 841 cctcacccca aaagcgagac ttgcactcac caaaaacctg agaataagcg agaaggcaaa 

 901 accaatgcga cgggtctgga ttgccaaacc cggcactcag gaaaaacgcc ctcttggtat 

 961 cccgacgatg acagacaggg cgcggcaagc tctgcttact ctcgccctgg aacctgaatg 

1021 ggaagctcgc ttcgagccaa acagctacgg gttccgacca ggacgctcat gccatgatgc 

1081 actccaagcc atctacaacg cgatacggca acaaagcaaa tttgttcttg atgccgatat 

1141 cgcgaaatgc ttcgaccgca tcgaccagca agcactgctc aagaaaatga acacatcctc 

1201 agctatccgt cggcaaatac gcgcctggct gaaagcagga gtgatggaag gtagtgaact 

1261 attccccaca ccgacaggca caccccaagg cggcgtgatt tcacccctgt tagcgaatat 

1321 cgctttacat ggcatggaag aacgagtcaa acaggtgtcc aagatggcac aactgatccg 

1381 ctatgctgac gattttgtgt gtatccacac agaccaacag atagtgcaaa gttgccagac 

1441 ggtcctggag gaatggctgg caggcatggg attggaattg aagccaagca aaacacggat 

1501 agctcacact cttcttttag aagaagggca accgggtttc gactttctgg ggtttaccgt 

1561 tcgacaattt cccgttggca agtaccatac aggaacgaat agtcgcggca aacccctggg 

1621 cttcaaaacg attatcaaac caagcaagaa gagcatcaag actcacaccg aaaagctgag 

1681 aagaataatc cacaaacata aggcacagcc tcaatcattc ctgattgagc acctcaatcc 

1741 gataattcgg ggatggacac atttcttctc taaagttgtg agcggagcca cgttcaagaa 

1801 gctggacagg actctctaca tgcaattgaa agcttgggca accagtcatc atcgcaacca 

1861 aagtcagaaa tggctggcca ggaaatactg gctaacgatt ggcacgcaaa actggtgctt 

1921 tgccgtccaa aaaggggagg gaattaagcg cctggttcaa cactcagata ggccgattac 

1981 tcggcacgtc aaggtgaaag aacgccgtag cccgtacgat ggcgactggg tgtactggag 

2041 taatcggata ggacagcatc cgcaaataaa agcggaagta gcccgactgc tgaaatccca 

2101 gacaggcaag tgcactcact gcgggttgta tttcatgaat ggagagttgc tggaagtgga 

2161 tcaccggaag ccgaaacgat tcggcggaag gaatatttca tcaaataagc agctacttca 

2221 tcgacattgc caccatcaga aaaccgccgc tgagcgcatc caacagttac aatcccaatc 

2281 gaggataaca gaagcggaac gtcttcagct acaagccaaa cggcaagcac tgctggaaga 

2341 ttatcaaccc tacaaatcca agaaaaggtt gacggacgca gaatggatgc aacagtggca 

2401 ctgagataga ggtactcatg acaagagcct ggtcatcgag gagccggatg aggtgaaagt 

2461 ctcatgtccg gttttgaaga ccagccgggt gggcgactgc ccggctgagt ttaat

3' end  

[top]


 

[intron& flanking sequence]

168241 cctcaccgca actaaaagct tccgaccgct acgagtacgg caacatcgac gacccggccg
168301 agcgcgaatt ttttacccaa ctgagcccga tcacctacgt caagcaggtg cgctcgcctt
168361 tgatggtcct gcacggcgcg aacgacccgc gcgacccggt gggcgaagcc gaccaactgg
168421 tagatgccct gcgctcccag ggaggcgatg tcgaatattt gcgctttccc gacgaaggcc
168481 acagcatccg caaactgacc aaccgggtga tcgcctaccg tcgcattgcc gcatttctgg
168541 aacgcacgat cggcaagggc atcgctgtct gcggcggtta gccgcgtgca gtggaagtat
168601 cggttagcca ttcaataggt cgggtcaaaa tagccgggaa ctgagagcaa tcgcgtggct
168661 gggaccgagc gccgcccctt tgatacaagc ctgcagggcc ttgccgcctt gtacagtcgg
168721 cattttttgg cctggctgcg cgggccgcaa gctgtctggg agcaggaact caactcggtg
168781 atcgtcgctc agcagcgccg ggccgatttt ttgatccgct accgcgacga cgggcagcaa
168841 gagcgcctta ttaaactcag ccgggcagtc gcccacccgg ctggtcttca aaaccggaca
168901 tgagactttc acctcatccg gctcctcgat gaccaggctc ttgtcatgag tacctctatc
168961 tcagtgccac tgttgcatcc attctgcgtc cgtcaacctt ttcttggatt tgtagggttg
169021 ataatcttcc agcagtgctt gccgtttggc ttgtagctga agacgttccg cttctgttat
169081 cctcgattgg gattgtaact gttggatgcg ctcagcggcg gttttctgat ggtggcaatg
169141 tcgatgaagt agctgcttat ttgatgaaat attccttccg ccgaatcgtt tcggcttccg
169201 gtgatccact tccagcaact ctccattcat gaaatacaac ccgcagtgag tgcacttgcc
169261 tgtctgggat ttcagcagtc gggctacttc cgcttttatt tgcggatgct gtcctatccg
169321 attactccag tacacccagt cgccatcgta cgggctacgg cgttctttca ccttgacgtg
169381 ccgagtaatc ggcctatctg agtgttgaac caggcgctta attccctccc ctttttggac
169441 ggcaaagcac cagttttgcg tgccaatcgt tagccagtat ttcctggcca gccatttctg
169501 actttggttg cgatgatgac tggttgccca agctttcaat tgcatgtaga gagtcctgtc
169561 cagcttcttg aacgtggctc cgctcacaac tttagagaag aaatgtgtcc atccccgaat
169621 tatcggattg aggtgctcaa tcaggaatga ttgaggctgt gccttatgtt tgtggattat
169681 tcttctcagc ttttcggtgt gagtcttgat gctcttcttg cttggtttga taatcgtttt
169741 gaagcccagg ggtttgccgc gactattcgt tcctgtatgg tacttgccaa cgggaaattg
169801 tcgaacggta aaccccagaa agtcgaaacc cggttgccct tcttctaaaa gaagagtgtg
169861 agctatccgt gttttgcttg gcttcaattc caatcccatg cctgccagcc attcctccag
169921 gaccgtctgg caactttgca ctatctgttg gtctgtgtgg atacacacaa aatcgtcagc
169981 atagcggatc agttgtgcca tcttggacac ctgtttgact cgttcttcca tgccatgtaa
170041 agcgatattc gctaacaggg gtgaaatcac gccgccttgg ggtgtgcctg tcggtgtggg
170101 gaatagttca ctaccttcca tcactcctgc tttcagccag gcgcgtattt gccgacggat
170161 agctgaggat gtgttcattt tcttgagcag tgcttgctgg tcgatgcggt cgaagcattt
170221 cgcgatatcg gcatcaagaa caaatttgct ttgttgccgt atcgcgttgt agatggcttg
170281 gagtgcatca tggcatgagc gtcctggtcg gaacccgtag ctgtttggct cgaagcgagc
170341 ttcccattca ggttccaggg cgagagtaag cagagcttgc cgcgccctgt ctgtcatcgt
170401 cgggatacca agagggcgtt tttcctgagt gccgggtttg gcaatccaga cccgtcgcat
170461 tggttttgcc ttctcgctta ttctcaggtt tttggtgagt gcaagtctcg cttttggggt
170521 gagggatttg actccatcaa ccccagctgt tttcttgccc tgattatcct gagtcaccct
170581 tcgtacggca agacatcttg ctgaccaaga acgtatcagt agtttctgga gtttacggac
170641 tgccttgaaa tcaccacgtt gcgaggcttt gaatatgcgt gtttgcagct tgaatactct
170701 gcgttggatt tgacgccaat tgagagaatt ccattccacc atcgaagatt gctctcgtgt
170761 cttggatctg tgcactgcta ctggctccta ttcattcctg gtcatcgtgc ctacgtcagc
170821 atgtccctga cattactcag ggcattggct ttttaggcaa tctttcctgt cgcgagcatg
170881 cggttggcat ctgctcaggc atcgaccgag tcctgagaac tagcaacagg ttacttcgtt
170941 ccgattcacc attgattgaa tctgtagggt gatgctcatt tgccgggttt ttgtcgggag
171001 tacaaacagg tcgcatgtag aacgcctatc ccttatcctt cgccttttgg ctccagcctg
171061 tcagcccaat ttggctggtt aatcgtaacg gcaattaatg catctttgct ttcgctaccc
171121 gtggattctt gctgggcgag tttccaagct agggctatta gatatcgcct tttcatcccg
171181 ctttacggat tgatggccag tcgctaccgt agggatgatg ctgtcaccac tgtacctgcg
171241 gggagagact ttcactctca tgatgaatca gttgtcaagg tgtgtttgga gtatgaacct
171301 cctttcactt cttgccagtc atccttgaga tatcgctatc ccatttcgac tgaacgaatc
171361 gcac
ttgcat attgagttcc agaccctggt caaaaaaggt gacctgagcg aggaaatgcc
171421 cgttcgtatg gctacctacg ccctgttcgt gctcaaccgt tacggccagg tccctgatca
171481 ggtgctaatc ctgctcaagg atagtgaggc ggcccggcag gtgcccgacc gcttcgagca
171541 gggccgggtg cgggtggagt acgacgtgat ccggctatgg gaacaagatc ccgaactgct
171601 acttgcctcc ggcctggtgg ggttgatgcc gcttgtgccg ttgatgcgtg gggaggatgt
171661 gtcgagcctg ctggagcgtt gcaccgcgct tatcgagtca gagatagaat cgggccagga
171721 gcgaaacgag gtgctggctg tcacgggcct gcttgcatcg ctcaaagaca gaaggattgt
171781 tcaagcattt ttcaggacaa agtcgatgct gagcttgttg caagagacgc cgctgtttca

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[ORF sequence]

 

              MVEWNSLNWRQIQRRVFKLQTRIFKASQRGDFKAVRKLQKLLIR
SWSARCLAVRRVTQDNQGKKTAGVDGVKSLTPKARLALTKNLRISEKAKPMRRVWIAK
PGTQEKRPLGIPTMTDRARQALLTLALEPEWEARFEPNSYGFRPGRSCHDALQAIYNA
IRQQSKFVLDADIAKCFDRIDQQALLKKMNTSSAIRRQIRAWLKAGVMEGSELFPTPT
GTPQGGVISPLLANIALHGMEERVKQVSKMAQLIRYADDFVCIHTDQQIVQSCQTVLE
EWLAGMGLELKPSKTRIAHTLLLEEGQPGFDFLGFTVRQFPVGKYHTGTNSRGKPLGF
KTIIKPSKKSIKTHTEKLRRIIHKHKAQPQSFLIEHLNPIIRGWTHFFSKVVSGATFK
KLDRTLYMQLKAWATSHHRNQSQKWLARKYWLTIGTQNWCFAVQKGEGIKRLVQHSDR
PITRHVKVKERRSPYDGDWVYWSNRIGQHPQIKAEVARLLKSQTGKCTHCGLYFMNGE
LLEVDHRKPKRFGGRNISSNKQLLHRHCHHQKTAAERIQQLQSQSRITEAERLQLQAK
RQALLEDYQPYKSKKRLTDAEWMQQWH

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[secondary structure]

 

[top]


 

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