[Back to introns by organism]   [Back to home page]

Information of Ge.ur.I1-1 intron  (Format of information for each intron)

[Intron sequence]

[Intron and flanking sequence]

[ORF sequence]

[Secondary structure]

Note: Multiple insertions

NZ_AAON01000001 Geobacter uraniumreducens Rf4 ctg276 (107921-110469)

[Intron sequence]

Sequence from Genbank entry. The boundaries of the intron are marked

as red and ORF is marked as blue (The nucleotide underlined are

start and stop codons of the ORF)

5' end

                 gtacgccagg ccaagcctgg ctgatctatc tgactgaaaa gtgtcagaca
95821 tgtaaattgc tcgttcacca tgtagtcgcg gtctgtcacg agagggtaac caaacgtggg
95881 gagtaagacc ggttctttgt aagaaaagag cgaagggtac gataactacc ctgacgacga
95941 agacgcgagc ccagcgcaag cgaacccgtt tcggcctcgt tacacgtagt tgacagtggc
96001 caaccttccg aatgtggtga agcctgccat ccaccggtga taaacgagcg aaagaaccgg
96061 tgggactgtc cggggtgatt ggggagggcg cgtgtcgaaa gatcagccga ggaacctggg
96121 aggtccgacg taattcccaa agcgaaaggg tttcgccgaa gggagaacgc cgacggggaa
96181 tcaataaccc gccaagcgtg tacggtcgga attcggagcg gcccatagta gccgggaagc
96241 ggggtaatgc ccgtggagcc aaggggccgt acttcagtca tgtttacacg gaaagagagg
96301 agacccgctt gagcgacaga cgctccataa cggaatggat ggccgaagga ttcgaacctg
96361 aacccggact gccggtaaaa gtctcccttc tgcggtggaa actgagcagc aaggccaaac
96421 gagaaccgca gttccggttc tatgcccttt acgaccgaat ccatcgtcgt gatgtacttg
96481 aaacggcgtg gttgcgagta aaggcgaaca agggcgcgcc gggagtcgat ggtgtcagca
96541 ttgaatccat cgaggtgcgg gcagacggaa tatccggcta tcttgacgaa attcaagaaa
96601 gcctgagaac caaaaactac aaaccatccc cggtgcgtcg cgtctacatc accaagccca
96661 acggcaaact gcgcccgctc ggcataccgt gcgtgcggga cagaattgta caggcagccg
96721 tactccttat cctcgaaccg atatttgagg tggactttct cgactgctcc catggatttc
96781 gtcccaaaag gcgtccccat ggagccctcg accaagtcgg taataacctc caactcggac
96841 ggcaggaagt gtatgacgcg gatctttcga gctactttga cagcatcccc cacgagcacc
96901 tgatagtaga acttgagcgg cgcatagccg accggagtgt cctcaaactg atccggcaat
96961 ggcttcacag tccggtcaga gaagaagacg gcagcatcag ccgtcccaaa caagggacgc
97021 cacaaggcgg ggtaatatct ccccttcttg ccaacatcta ccttcaccgg ctcgaccggg
97081 cctttcacga agaagcagac agcccctacc acttcgccag agcgcgcatg gtacggtttg
97141 ccgacgactt cgtagtaatg gccagacaca tgggcaatcg cataaccgga tggctggaag
97201 agaaactcga aacagacctt ggactcagca tcaaccgtga caaaaccggt attgtcagaa
97261 tgaacaagaa agagagcctg aactttctgg gattcaccct ccgctatgac cgtgacctgc
97321 ggggcagaga ttgggattat ctcaacatca tgccgagtaa gaaggccata ggagcactca
97381 agggaaaaat ccgggagaag acccgaagcg gatacaaaaa gccgcttgtc gaagcaattg
97441 ccgaggtaaa cagcatcctt cgcggatggg gcaactactt cgactacggg tatccccgga
97501 aagtatttcg agacgtgaat cattacacga ggactcgctt tcgaatattt ctgaacaatc
97561 ggagccaaag gcggagcaaa cccttcaggg caggtgaaag cctgtatgcc ggacttaagc
97621 gatatggtct ggtttacctg taacagcaaa gccacaactc ctcaataatg ccgtgcagca
97681 agaggctgat aggtaagccg tatgcgggaa atccgcacgt acggtttgac gagggggagc
97741 tggttaaggc aactatggta aggctactta ggcacc

3' end

[top]

[Intron and flanking sequence]

95461 tgggcagcaa taccacatga tgttcccaca agggattggt atggtgaaag gcgaagaccc
95521 gttcgttctc ccagtagacc cggatatccg ccagccctct caggatcttc ccgcagtaaa
95581 agtcacaccc cgtctctgtc atgtccttct ctcctcaaac aacgggcttt tgcccgtcaa
95641 gtattatcct ataaaaagca tctagccacg aatatacaag ctcatgtgat gcagaaggca
95701 ctcaccagat cggtgactac tcaagattta ccaaggggtt aaaaacatta gtgtttattc
95761 gtgtcattcg gtacgccagg ccaagcctgg ctgatctatc tgactgaaaa gtgtcagaca
95821 tgtaaattgc tcgttcacca tgtagtcgcg gtctgtcacg agagggtaac caaacgtggg
95881 gagtaagacc ggttctttgt aagaaaagag cgaagggtac gataactacc ctgacgacga
95941 agacgcgagc ccagcgcaag cgaacccgtt tcggcctcgt tacacgtagt tgacagtggc
96001 caaccttccg aatgtggtga agcctgccat ccaccggtga taaacgagcg aaagaaccgg
96061 tgggactgtc cggggtgatt ggggagggcg cgtgtcgaaa gatcagccga ggaacctggg
96121 aggtccgacg taattcccaa agcgaaaggg tttcgccgaa gggagaacgc cgacggggaa
96181 tcaataaccc gccaagcgtg tacggtcgga attcggagcg gcccatagta gccgggaagc
96241 ggggtaatgc ccgtggagcc aaggggccgt acttcagtca tgtttacacg gaaagagagg
96301 agacccgctt gagcgacaga cgctccataa cggaatggat ggccgaagga ttcgaacctg
96361 aacccggact gccggtaaaa gtctcccttc tgcggtggaa actgagcagc aaggccaaac
96421 gagaaccgca gttccggttc tatgcccttt acgaccgaat ccatcgtcgt gatgtacttg
96481 aaacggcgtg gttgcgagta aaggcgaaca agggcgcgcc gggagtcgat ggtgtcagca
96541 ttgaatccat cgaggtgcgg gcagacggaa tatccggcta tcttgacgaa attcaagaaa
96601 gcctgagaac caaaaactac aaaccatccc cggtgcgtcg cgtctacatc accaagccca
96661 acggcaaact gcgcccgctc ggcataccgt gcgtgcggga cagaattgta caggcagccg
96721 tactccttat cctcgaaccg atatttgagg tggactttct cgactgctcc catggatttc
96781 gtcccaaaag gcgtccccat ggagccctcg accaagtcgg taataacctc caactcggac
96841 ggcaggaagt gtatgacgcg gatctttcga gctactttga cagcatcccc cacgagcacc
96901 tgatagtaga acttgagcgg cgcatagccg accggagtgt cctcaaactg atccggcaat
96961 ggcttcacag tccggtcaga gaagaagacg gcagcatcag ccgtcccaaa caagggacgc
97021 cacaaggcgg ggtaatatct ccccttcttg ccaacatcta ccttcaccgg ctcgaccggg
97081 cctttcacga agaagcagac agcccctacc acttcgccag agcgcgcatg gtacggtttg
97141 ccgacgactt cgtagtaatg gccagacaca tgggcaatcg cataaccgga tggctggaag
97201 agaaactcga aacagacctt ggactcagca tcaaccgtga caaaaccggt attgtcagaa
97261 tgaacaagaa agagagcctg aactttctgg gattcaccct ccgctatgac cgtgacctgc
97321 ggggcagaga ttgggattat ctcaacatca tgccgagtaa gaaggccata ggagcactca
97381 agggaaaaat ccgggagaag acccgaagcg gatacaaaaa gccgcttgtc gaagcaattg
97441 ccgaggtaaa cagcatcctt cgcggatggg gcaactactt cgactacggg tatccccgga
97501 aagtatttcg agacgtgaat cattacacga ggactcgctt tcgaatattt ctgaacaatc
97561 ggagccaaag gcggagcaaa cccttcaggg caggtgaaag cctgtatgcc ggacttaagc
97621 gatatggtct ggtttacctg taacagcaaa gccacaactc ctcaataatg ccgtgcagca
97681 agaggctgat aggtaagccg tatgcgggaa atccgcacgt acggtttgac gagggggagc
97741 tggttaaggc aactatggta aggctactta ggcaccgcca aacgaaaggg gcggaaacgg
97801 acaagccaaa cctaatgatg tcgtaacctg cttcctactc tactggctaa aatgcttttt
97861 ataggttcat cgtggaatgg cgttgagccg caggatttcc tgcgcctcct tgagcgggtc
97921 gccatcccct tccagccagt ggatcaccgt gccgtgccgc tccatgcggc ggaaccagtt
97981 gtcctggcgc ttggcgaagt cgtgaatggc gctgttcagc ttctggaaca tgtcgttgcg
98041 gttcagctcc cccttgaggt actttgccac gaaacgatat tccagaccgt agaattccag

[top]

[ORF sequence]

MIGEGACRKISRGTWEVRRNSQSERVSPKGERRRGINNPPSVYGRNSERPIVAGKRGN

ARGAKGPYFSHVYTEREETRLSDRRSITEWMAEGFEPEPGLPVKVSLLRWKLSSKAKR

EPQFRFYALYDRIHRRDVLETAWLRVKANKGAPGVDGVSIESIEVRADGISGYLDEIQ

ESLRTKNYKPSPVRRVYITKPNGKLRPLGIPCVRDRIVQAAVLLILEPIFEVDFLDCS

HGFRPKRRPHGALDQVGNNLQLGRQEVYDADLSSYFDSIPHEHLIVELERRIADRSVL

KLIRQWLHSPVREEDGSISRPKQGTPQGGVISPLLANIYLHRLDRAFHEEADSPYHFA

RARMVRFADDFVVMARHMGNRITGWLEEKLETDLGLSINRDKTGIVRMNKKESLNFLG

FTLRYDRDLRGRDWDYLNIMPSKKAIGALKGKIREKTRSGYKKPLVEAIAEVNSILRG

WGNYFDYGYPRKVFRDVNHYTRTRFRIFLNNRSQRRSKPFRAGESLYAGLKRYGLVYL

[top]

[Secondary structure]

[top]

| Introduction | Intron secondary structure | Intron ORF structure | Introns listed by organism | Bacterial intron fragments | Alignment of insertion sequence |

| Phylogenetic tree of intron ORFs | How to find group II intron | Site map | Contact us |