[Back to introns by organism] [Back to home page]
Information for Ge.ur.I2 intron (Format of information for each intron)
[Intron and flanking sequences]
Sequence
from Genbank entry. Intron is identified in red.
The ORF
is identified in blue with start and stop codons
underlined.
5' end
1 gtgcgccagg catggcgcgt ggcgcgtaag cgccatccaa ttgggtatgg tgcctgattg
61 gtgacttgga ggtgaaagtc ctcttcggac cctgatggtg ggaaccgata gctgaacagc
121 aagggtgtcc ggggcgaccc ggaatctgaa ggaagctgta ggcaaagtcc tggcccgacg
181 aacaggaatc gcatatgagg cagccacatc tgggcgagaa ggcaaacaga ttcaaagccc
241 gataaccatc cagaaagatg tggaagtaga tgcggcgggt atatgggatg aaggtcacgc
301 gcattaccct gggaggtctg tcaacctgcc ttgtgctacc ggcatcgaga ggtgccggga
361 tgggttggca gaagtcagca gaggccatac gagtcggaat aaccgaccga caaagggccg
421 aacttgaagt aagcggacag gagccttgag tttcgatgac gacaggagca gcagaaggcc
481 gggttgggat acccggcgcc agcccggagg gtagcggttg gaaaccgcga gagaaaggga
541 gaggtgcggc aaacgtcacg ggaaggaaag cagctcactg gccggaagcg gcaacgggac
601 tgatggagaa gatcgtcagt cgcggcaaca tgatggcggc atactcacgg gtaatgcgca
661 acaagggagc gcccggcgtc gataacatgc cggtaacggc cctgaagggc tacctacagg
721 aggaatggcc gcgcatcaga gaagaactgc tgacgggaac gtatcacccg caaccggtgc
781 ggaaagtaga aattcccaaa ccgggaggcg gcacacggat gctgggaatt cccaccgtcc
841 ttgaccgact cattcagcag gcggtgcatc aagttttgag cccgctgttc gaccctggtt
901 tctccataag ttcccacggg tttcgccctg gacggagcgc ccatcaagcg atcaaggcag
961 ctcggaagta tgtagagagc ggccttaggt gggtggttga cattgacctt gagaaatttt
1021 tcgaccgagt ccaccacgac acccttatgt cgctggtgaa acgcaaggtt ggagaccgtc
1081 tggtgctgtc ccttatcgac agctacctta aggcagggat acttgaagga ggagtgacgt
1141 caccccggtt ggaaggcacg ccgcaaggcg ggcctctctc gccgctgctg tccaacatcc
1201 tcctcgacga actggacaag aaactggaaa gaaggggcca taagttctgc cgctatgccg
1261 acgacgcaaa tatctatgtt gcaacgagga gaagcggcga gcgtgtcatg gcctcaatta
1321 ccggctacct gtccgagcgg ctcaagctca cggtcaacca gggcaaaagc gcggttgacc
1381 gtccgtggaa aaggtcgttt ctgagttaca gcatgacccg gcaccgcaaa ccgcggctta
1441 ccgtggccaa gaaagcggct gccaggctca aggccaacct caagacgatc tttaggcggg
1501 gaaggggtca gaacatccaa accaccgttg aagagacaac cccgaaactt aggggttggt
1561 taaactactt tcggtacgcg gaagtaaaag gcatcttcga ggaactggac ggatggctga
1621 gacgtaaact gcgtcgcatt ctctggaagc agtggaagcg ccccaagacg cgagcaaaga
1681 aactgatgcg gcggggatta tcggaggcaa ctgcatggcg gtcggccaca aacggccgcg
1741 gcccctggtg gaatgcaggg gccgcgcata tgaacaaagc tgttccgaaa ttctacttcg
1801 acaaactggg gctggtatca ctcatagacc agcttcaccg acttcaacgt acttcatgaa
1861 ccgccgtgta cggaaccgta cgcacggtgg tgtgggagga cggcgggagc aatcccgcct
1921 cctacccgat
3' end
[top]
[Intron and flanking sequence]
1 aattgtcacc accggcaagg gggggacgga cgatggcgaa ggccgggtcg aattcatcgc
61 ccgtttccgg gaaaaggggg tgaaaaaggc ccatcacgag ttggcggagt ttaagaaaga
121 cgacggcaaa tggttcttta ccgacggttc ggccgttccc cggaagcccg ctacaagcgt
181 caaggtcggc cgcaacgacc cctgcacatg cggcagcggt ttgaaataca agaaatgctg
241 cgggaaatga cccgcgacga tgcctatgaa aaaagcccgc gaaagcgggc ttttttgttt
301 gtgcgccagg catggcgcgt ggcgcgtaag cgccatccaa ttgggtatgg tgcctgattg
361 gtgacttgga ggtgaaagtc ctcttcggac cctgatggtg ggaaccgata gctgaacagc
421 aagggtgtcc ggggcgaccc ggaatctgaa ggaagctgta ggcaaagtcc tggcccgacg
481 aacaggaatc gcatatgagg cagccacatc tgggcgagaa ggcaaacaga ttcaaagccc
541 gataaccatc cagaaagatg tggaagtaga tgcggcgggt atatgggatg aaggtcacgc
601 gcattaccct gggaggtctg tcaacctgcc ttgtgctacc ggcatcgaga ggtgccggga
661 tgggttggca gaagtcagca gaggccatac gagtcggaat aaccgaccga caaagggccg
721 aacttgaagt aagcggacag gagccttgag tttcgatgac gacaggagca gcagaaggcc
781 gggttgggat acccggcgcc agcccggagg gtagcggttg gaaaccgcga gagaaaggga
841 gaggtgcggc aaacgtcacg ggaaggaaag cagctcactg gccggaagcg gcaacgggac
901 tgatggagaa gatcgtcagt cgcggcaaca tgatggcggc atactcacgg gtaatgcgca
961 acaagggagc gcccggcgtc gataacatgc cggtaacggc cctgaagggc tacctacagg
1021 aggaatggcc gcgcatcaga gaagaactgc tgacgggaac gtatcacccg caaccggtgc
1081 ggaaagtaga aattcccaaa ccgggaggcg gcacacggat gctgggaatt cccaccgtcc
1141 ttgaccgact cattcagcag gcggtgcatc aagttttgag cccgctgttc gaccctggtt
1201 tctccataag ttcccacggg tttcgccctg gacggagcgc ccatcaagcg atcaaggcag
1261 ctcggaagta tgtagagagc ggccttaggt gggtggttga cattgacctt gagaaatttt
1321 tcgaccgagt ccaccacgac acccttatgt cgctggtgaa acgcaaggtt ggagaccgtc
1381 tggtgctgtc ccttatcgac agctacctta aggcagggat acttgaagga ggagtgacgt
1441 caccccggtt ggaaggcacg ccgcaaggcg ggcctctctc gccgctgctg tccaacatcc
1501 tcctcgacga actggacaag aaactggaaa gaaggggcca taagttctgc cgctatgccg
1561 acgacgcaaa tatctatgtt gcaacgagga gaagcggcga gcgtgtcatg gcctcaatta
1621 ccggctacct gtccgagcgg ctcaagctca cggtcaacca gggcaaaagc gcggttgacc
1681 gtccgtggaa aaggtcgttt ctgagttaca gcatgacccg gcaccgcaaa ccgcggctta
1741 ccgtggccaa gaaagcggct gccaggctca aggccaacct caagacgatc tttaggcggg
1801 gaaggggtca gaacatccaa accaccgttg aagagacaac cccgaaactt aggggttggt
1861 taaactactt tcggtacgcg gaagtaaaag gcatcttcga ggaactggac ggatggctga
1921 gacgtaaact gcgtcgcatt ctctggaagc agtggaagcg ccccaagacg cgagcaaaga
1981 aactgatgcg gcggggatta tcggaggcaa ctgcatggcg gtcggccaca aacggccgcg
2041 gcccctggtg gaatgcaggg gccgcgcata tgaacaaagc tgttccgaaa ttctacttcg
2101 acaaactggg gctggtatca ctcatagacc agcttcaccg acttcaacgt acttcatgaa
2161 ccgccgtgta cggaaccgta cgcacggtgg tgtgggagga cggcgggagc aatcccgcct
2221 cctacccgat ttaaccgcaa ggggaatact ggcaataccc ggcttgtgcg gtacaatttt
2281 tctacggaga agtcaggcgg ttctcaagga ggacgaggat gaacatattt ctcagcggcg
2341 gcactggctt tgtcggcggc catcttagga gggccttgct ggagaaaggg caccggatca
2401 ggctccttgc ccacaagagg ggggatggtt tcgaagatgg gattgaggtg gtggaagggg
2461 acgtgacccg ccctgacacc tttgccgggc agctcgcggg gtgcgaagcc gcaatcaacc
2521 tggtggggat
[top]
MTTGAAEGRVGIPGASPEGSGWKPREKGRGAANVTGRKAAHWPEAATGLMEKIVSRGN
MMAAYSRVMRNKGAPGVDNMPVTALKGYLQEEWPRIREELLTGTYHPQPVRKVEIPKP
GGGTRMLGIPTVLDRLIQQAVHQVLSPLFDPGFSISSHGFRPGRSAHQAIKAARKYVE
SGLRWVVDIDLEKFFDRVHHDTLMSLVKRKVGDRLVLSLIDSYLKAGILEGGVTSPRL
EGTPQGGPLSPLLSNILLDELDKKLERRGHKFCRYADDANIYVATRRSGERVMASITG
YLSERLKLTVNQGKSAVDRPWKRSFLSYSMTRHRKPRLTVAKKAAARLKANLKTIFRR
GRGQNIQTTVEETTPKLRGWLNYFRYAEVKGIFEELDGWLRRKLRRILWKQWKRPKTR
AKKLMRRGLSEATAWRSATNGRGPWWNAGAAHMNKAVPKFYFDKLGLVSLIDQLHRLQ
RTS
[top]

[top]
| Introduction | Intron secondary structure | Intron ORF structure | Introns listed by organism | Bacterial intron fragments | Alignment of insertion sequence |
| Phylogenetic tree of intron ORFs | How to find group II intron | Site map | Contact us |