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Information for Me.hu.I2 intron  (Format of information for each intron

[Intron sequence]

[Intron and flanking sequence]

[ORF sequence]

[Secondary structure]

 

 

[Intron sequence]

 

Sequence from Genbank entry (intron is on the antisense strand). 

The boundaries of the intron are marked as red and ORF is marked 

as blue, with start and stop codons underlined.

Intron on antisense strand

3' end

   1 gtcgaatagg ggaattggat tactcctctc cccccttcca agaacgcatt gtgcgatttt 

  61 caccgcaata cgctcaggtt cttcactacc cgcttttatg ggcgcaatag agaaacatac 

 121 gaatcgactt ttgtgttgaa aggaatattc ccggtctttt atcaaaatag acagaatcta 

 181 taaatgggtt tttatccagt ttaaggaatc ttctgtattg aatcttcgtg tccgagaagt 

 241 ttgcaagagt tacactcgcc gttttaaaaa cagacttacg ggtcaaagta ggttgccagt 

 301 atttcctcgc tatccacttt ttccctttgt tattatgtct gcgtttcgcc catgtccaga 

 361 gcatattcct gagtatccaa tccagtttct ggaaggttac gcttgatgat actgttttat 

 421 ggtacatcgc ccatcctcgg atgattggat ttaacttttt aatcaggtct tcttgtttcc 

 481 aagcttttgc agacttaatg acctcgctca gtttatgagt gattgcagca atagctttct 

 541 ttgaaggttt aatcaggagt ttacccttga attttcgaaa attccatccc agaaaatcaa 

 601 aaccatcatc gatatgaaca attctcgttt tctcctcgga gagttcaaga ccacgttctt 

 661 taagaaaatc gataatgacc agtttacact gggctgcagt ctcctttgat tcagccgtta 

 721 cgaggaaatc atccgcaaac cgaatgagat gcaccttctt tcccggaaaa cgttccttta 

 781 gaatttgttc cataccgtca agagccatgt tagccagagt tggggaaata attccgcctt 

 841 ggggcgttcc agattcatta cggtagagta ttccatcaaa aatgtatccc gctttcagga 

 901 attggttaag aactcttgta tccatgggga tgttggttaa taaccaggag tgagagaaat 

 961 tatcaaagca ccccttgata tcgccttcaa gaatccattg ggcagagtct tttctgctta 

1021 aacattgaaa tgcatatgca gctgcatcct gtgcactgcg attcgttctg aatccaaatg 

1081 aggttctgtc tgctatggtt tctgcccatg gggtgagagc cattgcaaac agtgcctgca 

1141 ttgcacggtc gtacattgtg ggaatggaga gaggacgcat tttgctcgat tgaggtttgg 

1201 ggatgaaggt tcgccggaga ggtttagcct gatatccctt gtctgaaaga ctaagaactg 

1261 ctctcatctt atcctgagga gtactccatt tttctccgtc cactcctgca ctttttcttc 

1321 ctttgttgcc agctacccgg tgaactgcta acactttggc ataatacgaa tgagttagca 

1381 ggtactggag acgctcagca agccgataat tgccattctt tactgctttt gcgatacgtg 

1441 tctggagtcg cttgacaaac gcccttgctt tcttccatgg gaattttcgc cattgtttgg 

1501 caagagtttt gtccgagacg tcctcgctgt gttgcgtaat tgaacttatc tcgttcatta 

1561 taatccatcc tgctcgccgt gaaagaacca gctgcacgtc agcacccttt cgggtcaggg 

1621 caaagtctga acccttatcc acaaccatta cagccgggca ttcgcttttt gcagcatcct 

1681 actcccacta cgcatatagt cctcctcacg aagttcctac ctaaaaaaat tttttttttt 

1741 ttttaggagc gtattggggt ttccaagttc aataaaccag ataattgtgg tattttagga 

1801 ctcgcccata gaccggaacc agctacgtcc attcgtacca gcatcactca aactactgat 

1861 accgtgattc tccctcaatg gggacagggg caaatctctt tcctcctgct atatttaacg 

1921 atcctgcagc gattcaacgt ttgtttgtcc atgatacctt tccctagcag tatatcccaa 

1981 tgagactatg ggagtaacca ctttgttcct gcagcttcgc acccatttat tgctaaacac 

2041 gcacgtgcag gtagggacac ccagaatgga ttggggggct ttttttaccg aattaaaccg 

2101 gaatagcaat ctgatttacc gcttcttgtc gcac

5' end

 

Intron on sense strand

 

5' end

   1 gtgcgacaag aagcggtaaa tcagattgct attccggttt aattcggtaa aaaaagcccc 

  61 ccaatccatt ctgggtgtcc ctacctgcac gtgcgtgttt agcaataaat gggtgcgaag 

 121 ctgcaggaac aaagtggtta ctcccatagt ctcattggga tatactgcta gggaaaggta 

 181 tcatggacaa acaaacgttg aatcgctgca ggatcgttaa atatagcagg aggaaagaga 

 241 tttgcccctg tccccattga gggagaatca cggtatcagt agtttgagtg atgctggtac 

 301 gaatggacgt agctggttcc ggtctatggg cgagtcctaa aataccacaa ttatctggtt 

 361 tattgaactt ggaaacccca atacgctcct aaaaaaaaaa aaaaattttt ttaggtagga 

 421 acttcgtgag gaggactata tgcgtagtgg gagtaggatg ctgcaaaaag cgaatgcccg 

 481 gctgtaatgg ttgtggataa gggttcagac tttgccctga cccgaaaggg tgctgacgtg 

 541 cagctggttc tttcacggcg agcaggatgg attataatga acgagataag ttcaattacg 

 601 caacacagcg aggacgtctc ggacaaaact cttgccaaac aatggcgaaa attcccatgg 

 661 aagaaagcaa gggcgtttgt caagcgactc cagacacgta tcgcaaaagc agtaaagaat 

 721 ggcaattatc ggcttgctga gcgtctccag tacctgctaa ctcattcgta ttatgccaaa 

 781 gtgttagcag ttcaccgggt agctggcaac aaaggaagaa aaagtgcagg agtggacgga 

 841 gaaaaatgga gtactcctca ggataagatg agagcagttc ttagtctttc agacaaggga 

 901 tatcaggcta aacctctccg gcgaaccttc atccccaaac ctcaatcgag caaaatgcgt 

 961 cctctctcca ttcccacaat gtacgaccgt gcaatgcagg cactgtttgc aatggctctc 

1021 accccatggg cagaaaccat agcagacaga acctcatttg gattcagaac gaatcgcagt 

1081 gcacaggatg cagctgcata tgcatttcaa tgtttaagca gaaaagactc tgcccaatgg 

1141 attcttgaag gcgatatcaa ggggtgcttt gataatttct ctcactcctg gttattaacc 

1201 aacatcccca tggatacaag agttcttaac caattcctga aagcgggata catttttgat 

1261 ggaatactct accgtaatga atctggaacg ccccaaggcg gaattatttc cccaactctg 

1321 gctaacatgg ctcttgacgg tatggaacaa attctaaagg aacgttttcc gggaaagaag 

1381 gtgcatctca ttcggtttgc ggatgatttc ctcgtaacgg ctgaatcaaa ggagactgca 

1441 gcccagtgta aactggtcat tatcgatttt cttaaagaac gtggtcttga actctccgag 

1501 gagaaaacga gaattgttca tatcgatgat ggttttgatt ttctgggatg gaattttcga 

1561 aaattcaagg gtaaactcct gattaaacct tcaaagaaag ctattgctgc aatcactcat 

1621 aaactgagcg aggtcattaa gtctgcaaaa gcttggaaac aagaagacct gattaaaaag 

1681 ttaaatccaa tcatccgagg atgggcgatg taccataaaa cagtatcatc aagcgtaacc 

1741 ttccagaaac tggattggat actcaggaat atgctctgga catgggcgaa acgcagacat 

1801 aataacaaag ggaaaaagtg gatagcgagg aaatactggc aacctacttt gacccgtaag 

1861 tctgttttta aaacggcgag tgtaactctt gcaaacttct cggacacgaa gattcaatac 

1921 agaagattcc ttaaactgga taaaaaccca tttatagatt ctgtctattt tgataaaaga 

1981 ccgggaatat tcctttcaac acaaaagtcg attcgtatgt ttctctattg cgcccataaa 

2041 agcgggtagt gaagaacctg agcgtattgc ggtgaaaatc gcacaatgcg ttcttggaag 

2101 gggggagagg agtaatccaa ttcccctatt cgac

3' end

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[Intron and flanking sequence]

 

   1 tttttatcat tgtggattaa gtagctttac aacgatgaat taggtataaa catttggcat 

  61 aacagatgat atatcaaaga agagagaaag cgtgaggaaa aaatagcgct cgtgaatgaa  

 121 ccttatcata atattttaca taaataaatt taatcggatt atctagaatt taaaagcaca 

 181 tttattttac caattcttat actccccacc atcattcgtc aaattcatca cccccattct 

 241 gttatttcaa aatatataat ttaattatcg gggccccatc taaattaaaa aaaatgatta 

 301 gtcgaatagg ggaattggat tactcctctc cccccttcca agaacgcatt gtgcgatttt 

 361 caccgcaata cgctcaggtt cttcactacc cgcttttatg ggcgcaatag agaaacatac 

 421 gaatcgactt ttgtgttgaa aggaatattc ccggtctttt atcaaaatag acagaatcta 

 481 taaatgggtt tttatccagt ttaaggaatc ttctgtattg aatcttcgtg tccgagaagt 

 541 ttgcaagagt tacactcgcc gttttaaaaa cagacttacg ggtcaaagta ggttgccagt 

 601 atttcctcgc tatccacttt ttccctttgt tattatgtct gcgtttcgcc catgtccaga 

 661 gcatattcct gagtatccaa tccagtttct ggaaggttac gcttgatgat actgttttat 

 721 ggtacatcgc ccatcctcgg atgattggat ttaacttttt aatcaggtct tcttgtttcc 

 781 aagcttttgc agacttaatg acctcgctca gtttatgagt gattgcagca atagctttct 

 841 ttgaaggttt aatcaggagt ttacccttga attttcgaaa attccatccc agaaaatcaa 

 901 aaccatcatc gatatgaaca attctcgttt tctcctcgga gagttcaaga ccacgttctt 

 961 taagaaaatc gataatgacc agtttacact gggctgcagt ctcctttgat tcagccgtta 

1021 cgaggaaatc atccgcaaac cgaatgagat gcaccttctt tcccggaaaa cgttccttta 

1081 gaatttgttc cataccgtca agagccatgt tagccagagt tggggaaata attccgcctt 

1141 ggggcgttcc agattcatta cggtagagta ttccatcaaa aatgtatccc gctttcagga 

1201 attggttaag aactcttgta tccatgggga tgttggttaa taaccaggag tgagagaaat 

1261 tatcaaagca ccccttgata tcgccttcaa gaatccattg ggcagagtct tttctgctta 

1321 aacattgaaa tgcatatgca gctgcatcct gtgcactgcg attcgttctg aatccaaatg 

1381 aggttctgtc tgctatggtt tctgcccatg gggtgagagc cattgcaaac agtgcctgca 

1441 ttgcacggtc gtacattgtg ggaatggaga gaggacgcat tttgctcgat tgaggtttgg 

1501 ggatgaaggt tcgccggaga ggtttagcct gatatccctt gtctgaaaga ctaagaactg 

1561 ctctcatctt atcctgagga gtactccatt tttctccgtc cactcctgca ctttttcttc 

1621 ctttgttgcc agctacccgg tgaactgcta acactttggc ataatacgaa tgagttagca 

1681 ggtactggag acgctcagca agccgataat tgccattctt tactgctttt gcgatacgtg 

1741 tctggagtcg cttgacaaac gcccttgctt tcttccatgg gaattttcgc cattgtttgg 

1801 caagagtttt gtccgagacg tcctcgctgt gttgcgtaat tgaacttatc tcgttcatta 

1861 taatccatcc tgctcgccgt gaaagaacca gctgcacgtc agcacccttt cgggtcaggg 

1921 caaagtctga acccttatcc acaaccatta cagccgggca ttcgcttttt gcagcatcct 

1981 actcccacta cgcatatagt cctcctcacg aagttcctac ctaaaaaaat tttttttttt 

2041 ttttaggagc gtattggggt ttccaagttc aataaaccag ataattgtgg tattttagga 

2101 ctcgcccata gaccggaacc agctacgtcc attcgtacca gcatcactca aactactgat 

2161 accgtgattc tccctcaatg gggacagggg caaatctctt tcctcctgct atatttaacg 

2221 atcctgcagc gattcaacgt ttgtttgtcc atgatacctt tccctagcag tatatcccaa 

2281 tgagactatg ggagtaacca ctttgttcct gcagcttcgc acccatttat tgctaaacac 

2341 gcacgtgcag gtagggacac ccagaatgga ttggggggct ttttttaccg aattaaaccg 

2401 gaatagcaat ctgatttacc gcttcttgtc gcactgagat ccaataattc tgacaccata 

2461 tagattttca tagggctttt aatgaatgaa caggtattct ggatgctttt tccggctcca 

2521 gatccatgaa gagatttgga tgtgcccttt tcgttcggta ggacacatat gcaatcggag 

2581 ttttttacaa ataattacga ctcatcgttt tttcccgatg gtgcactcaa cttctccaac 

2641 cggagtctga accggcctgc tcctgacttt ataaaaccca gcatcgagca tggcatttgc 

2701 aataaaatct tcatgaatag ccatattctg tccc

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[ORF sequence]

 

MNEISSITQHSEDVSDKTLAKQWRKFPWKKARAFVKRLQTRIAKAVKNGNYRLAERLQ

YLLTHSYYAKVLAVHRVAGNKGRKSAGVDGEKWSTPQDKMRAVLSLSDKGYQAKPLRR

TFIPKPQSSKMRPLSIPTMYDRAMQALFAMALTPWAETIADRTSFGFRTNRSAQDAAA

YAFQCLSRKDSAQWILEGDIKGCFDNFSHSWLLTNIPMDTRVLNQFLKAGYIFDGILY

RNESGTPQGGIISPTLANMALDGMEQILKERFPGKKVHLIRFADDFLVTAESKETAAQ

CKLVIIDFLKERGLELSEEKTRIVHIDDGFDFLGWNFRKFKGKLLIKPSKKAIAAITH

KLSEVIKSAKAWKQEDLIKKLNPIIRGWAMYHKTVSSSVTFQKLDWILRNMLWTWAKR

RHNNKGKKWIARKYWQPTLTRKSVFKTASVTLANFSDTKIQYRRFLKLDKNPFIDSVY

FDKRPGIFLSTQKSIRMFLYCAHKSG

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[Secondary structure]

                                                   

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