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Information for Ms.b.I1 intron  (Format of information for each intron)

[Intron sequence]

[Intron and flanking sequence]

[ORF sequence]

[Secondary structure]

[Intron sequence]

Sequence from Genbank entry.  Intron is identified in red.  The ORF
is identified in blue with start and stop codons underlined.  

5' end

              gtg cgacaagaag ctatactatg aattgcgtta tatgctacct tttccatttg
377881 aggtaatcct actgtgacat gcataaatgg taacgtttgt gtgtgaagct cacatgacaa
377941 tatcaagaac tcaaagaacc tgactttgat aattggttag gataagaata ctatgaagaa
378001 cgtaaagtga accatcgtaa gaatcgtgaa gtggaataag cgaaaacagg ttgatgcgct
378061 ttaaccaaaa ggtacagaat caggctatag tgggtctgcg gacattatgg caaatggaca
378121 aatgattctc ggtttaaaga tggcttctaa ggcattcata ttatttgtag tatagaactt
378181 ggtaaaccct atatactcct tttttttttt tttttttttt ttgtaaaaaa aaaaaaggaa
378241 aggtagagac tctgtgaaga gaatcgatgg tatagaggtc agaggattta agcaaaaagc
378301 gaaagccatt ttgtaatgga atggatagag gttcaaactt tgccttggtc ctaaaggatg
378361 catacttgct tatttggtat tctattgtat gaaaggaggc aaacttctga atgtaagttg
378421 ttcaacgata tcctttctgg ataagaagct tacaaacgct caactttgcc agatgtggaa
378481 aaacatcaac tggtatcaaa tagaaaagag agttaataag ttgcaaactc ggattacaaa
378541 agcagttcta caaaacaaat ggaatcttgt caagagatta caatatttac tgactcactc
378601 ctacttcgcc aaacttttgg cagtaagaag agttactcaa aataaaggaa aaaggacatc
378661 tggaattgat ggtgaaaaat ggttaagttc tgcctccaaa atgaaagctg tccttagtct
378721 cactggtaaa agatacaaag ccaaaccgct taaacgagtc tttatcaata aacctggtaa
378781 gacgaagaaa cgtcccttag gtatccctac aatgtatgac agggctatcc aatctttata
378841 ttcactggct ctggaaccag tagctgaaat taagtctgac ctacggtctt ttggcttcag
378901 aaaacatcga agtaccaagg atgcctgtca gcaaatcttt ctatgtctga gtaaaaagac
378961 ttcagctcaa tggattttgg aaggtgatat tagaggatgt ttcgataata taaatcatca
379021 gtggttgctg actaatatcc caatagacaa agctatacta actcaatttc tcaaagcggg
379081 atttatttat aaacgtcatc tgaatccaac gaaagcaggt acgccacaag gtgggattat
379141 ctctcctatt ctggctaata tgacattgga tggtatcgag aaaatgcttc ttgttaagta
379201 ccctaaaaaa gggaaaaatt ccaagaaagt caacttcata agatacgctg acgatttcat
379261 agtcactgct aattccaaag aaactgcagg ggaaattaag gacgaagttg ttgcttttct
379321 taaagagcga ggtcttgagc tctccgatga taaaaccttt atcacaaaca ttaatgaagg
379381 ctttgacttc ctcggctgga atttccgcaa gtataaaggt aagcttctga tcaaaccttc
379441 caaaaagtcc attaaaagat ttactgaaac aattagtcaa accataacgg aaggaatggc
379501 atggtctcag aaagtcttaa tttccaaact aaatcctata ataagaggct ggtccaacta
379561 ccataattct gtggtttctt cggatacttt ccagaaactt gaccacataa tatgggaact
379621 gttatggaaa tgggctaaaa gaagacatcc gaataaatcc aaagattgga tcgtcaacaa
379681 atactggaat agaagcactt ctagaaggtg gaatttcaga acagagatta atgaactctt
379741 gctcttatct acaaccagga tttacagaca tattccttta aagctgcaaa tgaatacatt
379801 tcttgataag gactacttcc acgaacgtca aaacaaactt agttatcgga aggtttactc
379861 catttgaaaa aaaaaaaaaa gattgctgcc tgatacagaa agggttatag aatgcttgag
379921 ccgtatgaag ggaaactttc acgtatggtt cttagaagag ggagagcgag taatcgctct
379981 ttcttattca ac

3' end

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[Intron and flanking sequence]

377461 aatggaattt ctgtgtatat tctttataat taaaatctat tcctatctgg atttttcact
377521 cattgagatt gatcgaactc tggacttgtt ccttctcaga ttgaaaaagg catatttaaa
377581 atattctttt tttacgtatc aaaggctaca tctcttcgtg cccaaagcta taactcatta
377641 aaaggtattt cttatctcct acctgatccc attcttattt ttagattctt tttatataat
377701 acctgtcatc atcgtttttt ccagatttaa ctccaaattt ttagtttcga attgaaacct
377761 agcatttcta atatagtttt ctattactat ttttcccgaa tttattcttt tatcccactt
377821 tccgcaggtg cgacaagaag ctatactatg aattgcgtta tatgctacct tttccatttg
377881 aggtaatcct actgtgacat gcataaatgg taacgtttgt gtgtgaagct cacatgacaa
377941 tatcaagaac tcaaagaacc tgactttgat aattggttag gataagaata ctatgaagaa
378001 cgtaaagtga accatcgtaa gaatcgtgaa gtggaataag cgaaaacagg ttgatgcgct
378061 ttaaccaaaa ggtacagaat caggctatag tgggtctgcg gacattatgg caaatggaca
378121 aatgattctc ggtttaaaga tggcttctaa ggcattcata ttatttgtag tatagaactt
378181 ggtaaaccct atatactcct tttttttttt tttttttttt ttgtaaaaaa aaaaaaggaa
378241 aggtagagac tctgtgaaga gaatcgatgg tatagaggtc agaggattta agcaaaaagc
378301 gaaagccatt ttgtaatgga atggatagag gttcaaactt tgccttggtc ctaaaggatg
378361 catacttgct tatttggtat tctattgtat gaaaggaggc aaacttctga atgtaagttg
378421 ttcaacgata tcctttctgg ataagaagct tacaaacgct caactttgcc agatgtggaa
378481 aaacatcaac tggtatcaaa tagaaaagag agttaataag ttgcaaactc ggattacaaa
378541 agcagttcta caaaacaaat ggaatcttgt caagagatta caatatttac tgactcactc
378601 ctacttcgcc aaacttttgg cagtaagaag agttactcaa aataaaggaa aaaggacatc
378661 tggaattgat ggtgaaaaat ggttaagttc tgcctccaaa atgaaagctg tccttagtct
378721 cactggtaaa agatacaaag ccaaaccgct taaacgagtc tttatcaata aacctggtaa
378781 gacgaagaaa cgtcccttag gtatccctac aatgtatgac agggctatcc aatctttata
378841 ttcactggct ctggaaccag tagctgaaat taagtctgac ctacggtctt ttggcttcag
378901 aaaacatcga agtaccaagg atgcctgtca gcaaatcttt ctatgtctga gtaaaaagac
378961 ttcagctcaa tggattttgg aaggtgatat tagaggatgt ttcgataata taaatcatca
379021 gtggttgctg actaatatcc caatagacaa agctatacta actcaatttc tcaaagcggg
379081 atttatttat aaacgtcatc tgaatccaac gaaagcaggt acgccacaag gtgggattat
379141 ctctcctatt ctggctaata tgacattgga tggtatcgag aaaatgcttc ttgttaagta
379201 ccctaaaaaa gggaaaaatt ccaagaaagt caacttcata agatacgctg acgatttcat
379261 agtcactgct aattccaaag aaactgcagg ggaaattaag gacgaagttg ttgcttttct
379321 taaagagcga ggtcttgagc tctccgatga taaaaccttt atcacaaaca ttaatgaagg
379381 ctttgacttc ctcggctgga atttccgcaa gtataaaggt aagcttctga tcaaaccttc
379441 caaaaagtcc attaaaagat ttactgaaac aattagtcaa accataacgg aaggaatggc
379501 atggtctcag aaagtcttaa tttccaaact aaatcctata ataagaggct ggtccaacta
379561 ccataattct gtggtttctt cggatacttt ccagaaactt gaccacataa tatgggaact
379621 gttatggaaa tgggctaaaa gaagacatcc gaataaatcc aaagattgga tcgtcaacaa
379681 atactggaat agaagcactt ctagaaggtg gaatttcaga acagagatta atgaactctt
379741 gctcttatct acaaccagga tttacagaca tattccttta aagctgcaaa tgaatacatt
379801 tcttgataag gactacttcc acgaacgtca aaacaaactt agttatcgga aggtttactc
379861 catttgaaaa aaaaaaaaaa gattgctgcc tgatacagaa agggttatag aatgcttgag
379921 ccgtatgaag ggaaactttc acgtatggtt cttagaagag ggagagcgag taatcgctct
379981 ttcttattca actaaatttt cgtaaattca tatttttact gctattgatt ttcaatcaaa
380041 catggattta ttggactttt atgtaatagg taaaagcaac tatgtggtgg atttagaggc
380101 aaaaacgata tcattcaatt ttcaccaaat accactaaaa atccaaatta tttgcacctg
380161 ttcaaaaaaa gctatcagga aaattattga ttttcgaaaa aatactgcag aatgtaggtt
380221 ttatcaaatt tattttgctt attttttgtg ctgttttctt ttgcttattt ttatactgtt
380281 cgtaatttca caaagtatta tttccggtcc tgacaaaaaa gtagtaagaa ttctttcggg
380341 gtggattttt tcctttaaaa tggggtaaat gcatatgcta tatagaaaat ttgggcagac
380401 gggcaaaagt gtctcagtac tcagattcga tactatgtgg cttcctacta tttgagggta

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[ORF sequence]

MAVRRVTQNKGKRTSGIDGEKWLSSASKMKAVLSLTGKRYKAKPLKRVFINKPGKTKK

RPLGIPTMYDRAIQSLYSLALEPVAEIKSDLRSFGFRKHRSTKDACQQIFLCLSKKTS

AQWILEGDIRGCFDNINHQWLLTNIPIDKAILTQFLKAGFIYKRHLNPTKAGTPQGGI

ISPILANMTLDGIEKMLLVKYPKKGKNSKKVNFIRYADDFIVTANSKETAGEIKDEVV

AFLKERGLELSDDKTFITNINEGFDFLGWNFRKYKGKLLIKPSKKSIKRFTETISQTI

TEGMAWSQKVLISKLNPIIRGWSNYHNSVVSSDTFQKLDHIIWELLWKWAKRRHPNKS

KDWIVNKYWNRSTSRRWNFRTEINELLLLSTTRIYRHIPLKLQMNTFLDKDYFHERQN

KLSYRKVYSI

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[Secondary structure]

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| Introduction | Intron secondary structure | Intron ORF structure | Introns listed by organism | Bacterial intron fragments | Alignment of insertion sequence |

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