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Information of N.sp.I4 intron  (Format of information for each intron)

[Intron sequence]

[Intron and flanking sequence]

[ORF sequence]

[Secondary structure]

 

[Intron sequence]

 

Sequence from Genbank entry.  Intron is identified in red.  The ORF
is identified in blue with start and stop codons underlined.  

               

5' end              

       gtgtgattc gttctgtcga aacgagtaga aatattcggg gatgacaggc aagggaaata

45481 ttcgggagaa attccgacag aaccttgaca actcaatttt tcgtgatggt gaaattccat

45541 ccctccaagt gcaggagtga aagcaagtcc cccatttcag caaaagtggt tctttgttgg

45601 gatgaagcgg ggaatcatgg cggtaactgc aagcctaatg tggaatcccg cctagcatag

45661 ctggtcatgg atagtcaaac gaatctcttg attgaatcat cgttatgcaa aacaagccaa

45721 aaggctgaca ggcttgtccc aaaagggaaa agattagtgg ttggctgatt agcgacagac

45781 caataagcac tcacaataaa ctcggtgaag agagagagtc ctaaaaccaa cgtcaaacga

45841 aaaattggga acgaagtaac cccctaatgt actctccaaa actggtcgaa ctttggagta

45901 ggtagccaac cggaagtcat cagggggagg gattgcctca gaagcgaatg cctccttgta

45961 acgagaagga tatgcagacg gaggcacggt gacttggatt gtagaggtgc aagtagcaat

46021 gtatacatct aaaacgagtt tcaagactac ggtggaatgg aatgctatcc cctggcaaaa

46081 gctagaaagg aaagtattta agttacaaaa gcgcatctac aaagcctcgc agcgtggcga

46141 tgtcaaagca gttcgtcaac tccaaaaaac gttgttgcac tcctggtcag caaagtgttt

46201 agcggttcgt cgggtaacac aggacaaccg aggtaagaag acggcaggag tggatgggcg

46261 gaaaaacctc tccccaaaag cacgtctcat cttagtacaa tccatgaagc taggtgataa

46321 agcctctccc acccgcaggg tgtggattcc gaaacctggc tcatcaggcg aaaaaagacc

46381 cctttctata cccactctat acgaccgcgc cttgcaatcg ctagtaaaac tagccttaga

46441 acccgaatgg gaagctcgct tcgagccaaa ctcgtttggt tttcgacctg gaagaaacgc

46501 ccatgatgca atgaaggcaa tattcaacac tattaagttc aaacctaaat atgttttgga

46561 tgctgatatt gcaaaatgtt ttgacaaaat tgatcataat gttctgctgt caaaattaaa

46621 tacattcccc accatcagcc gacaaattcg tgcatggtta aaagcgggag tgattgattt

46681 ctccgaatat gctttgaggg agaaatctga ccacacaaca tcgatgggtg ttccacaagg

46741 gggtacaatt tcgccgctat tagcgaatat agccctccac ggcatggaaa accgaattaa

46801 acaagttgct ctaaccttac ccggatgtaa atctgagaat cgtcaagcaa taagcttaat

46861 cagatttgca gatgattttg tcatcctgca caaagacctc gccgttatcc aaagatgtca

46921 gcagattatt agtgaatggt taagcgagtt ggggctggaa ttgaagccaa gtaaaacccg

46981 aatatcccat acacttaata tgtatgaagg taaggttggt tttgattttc taggtttcac

47041 tgttcgacaa tttcctgtag gaaaatatca cagtggtaaa agctcaagtg gaaaattact

47101 tggttacaaa actctgatta ccccaagtaa agcaaagctg aagatacacg cgcagaagat

47161 aggtaaattg attgatgagc ataaggcagt accacaatct gatttaatcg ctcatttgaa

47221 tcccgtcatc cgtggatgga caaactacta ctcatgtgtc gtcagtaaac gcatatttaa

47281 ccaggctgat acaacattat ttagtcagct aaaagcatgg gcagaacatc gtcaccctaa

47341 taaatcttcc cgatggagtt gtcaaaagta ttggcaaacc gtagggtctg ataattgggt

47401 atttaaaccc cataaccaga aaattcgcct actcaagcac cgtgaaactc gcattgtgag

47461 acacatacag gtgaaaggaa gccgtagccc gtttgatggt gactgggtgt actggagttc

47521 cagaatgggt aaacatcccg aagccccaat cagggtggca acactcctga aaatgcagaa

47581 aggaaagtgt actcactgtg gactgttttt tcaccatgaa gatttgatgg aaatcgacca

47641 taaaatcccc cgctctcaag gcggtaagga tagttatgac aaccttcaat tacttcatgg

47701 acattgccat gatgctaaaa cggcagaaga taaatgtgct gttacagttc cagagctaga

47761 tgaggattat ctcaacctta atccctttta actctgaact tagaggtgtg catgataagc

47821 accaaatcat tgaggagccg tgtgaaatta acgtttcacg cacggttttg tagccgagtc

47881 agggaggtga ctttctggct taggcat

3' end  

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[Intron and flanking sequence]

 

45001 atgcaactga gccaggatta tttgcaacca acctgcaatc atcggtttga gccaggatta

45061 tctgcaacta taaaagtaaa aaaaacgaac ggttttttaa ctgcgtcacc agtaaggctt

45121 agagttactt ttaccgttgg tttttaagta aaaaaactcg gtaaagaatt caaagttaat

45181 ttataaaatt ctcaaatgag ttttttgaca aactcctgtc aaggagagaa aacttagtca

45241 tagtaaagtg ttgagcttat ttgcaattaa tcctggtcga aacggatgat tgcaggctgg

45301 ttgcatttaa tcctggctca gttgcagtta atcctggttc aaatgaaatt atagttgcaa

45361 ttaatcctgg ctgaaaacag tgatgattgc aggtctgagc gattagcatt gcaggtcgct

45421 agtgtgattc gttctgtcga aacgagtaga aatattcggg gatgacaggc aagggaaata

45481 ttcgggagaa attccgacag aaccttgaca actcaatttt tcgtgatggt gaaattccat

45541 ccctccaagt gcaggagtga aagcaagtcc cccatttcag caaaagtggt tctttgttgg

45601 gatgaagcgg ggaatcatgg cggtaactgc aagcctaatg tggaatcccg cctagcatag

45661 ctggtcatgg atagtcaaac gaatctcttg attgaatcat cgttatgcaa aacaagccaa

45721 aaggctgaca ggcttgtccc aaaagggaaa agattagtgg ttggctgatt agcgacagac

45781 caataagcac tcacaataaa ctcggtgaag agagagagtc ctaaaaccaa cgtcaaacga

45841 aaaattggga acgaagtaac cccctaatgt actctccaaa actggtcgaa ctttggagta

45901 ggtagccaac cggaagtcat cagggggagg gattgcctca gaagcgaatg cctccttgta

45961 acgagaagga tatgcagacg gaggcacggt gacttggatt gtagaggtgc aagtagcaat

46021 gtatacatct aaaacgagtt tcaagactac ggtggaatgg aatgctatcc cctggcaaaa

46081 gctagaaagg aaagtattta agttacaaaa gcgcatctac aaagcctcgc agcgtggcga

46141 tgtcaaagca gttcgtcaac tccaaaaaac gttgttgcac tcctggtcag caaagtgttt

46201 agcggttcgt cgggtaacac aggacaaccg aggtaagaag acggcaggag tggatgggcg

46261 gaaaaacctc tccccaaaag cacgtctcat cttagtacaa tccatgaagc taggtgataa

46321 agcctctccc acccgcaggg tgtggattcc gaaacctggc tcatcaggcg aaaaaagacc

46381 cctttctata cccactctat acgaccgcgc cttgcaatcg ctagtaaaac tagccttaga

46441 acccgaatgg gaagctcgct tcgagccaaa ctcgtttggt tttcgacctg gaagaaacgc

46501 ccatgatgca atgaaggcaa tattcaacac tattaagttc aaacctaaat atgttttgga

46561 tgctgatatt gcaaaatgtt ttgacaaaat tgatcataat gttctgctgt caaaattaaa

46621 tacattcccc accatcagcc gacaaattcg tgcatggtta aaagcgggag tgattgattt

46681 ctccgaatat gctttgaggg agaaatctga ccacacaaca tcgatgggtg ttccacaagg

46741 gggtacaatt tcgccgctat tagcgaatat agccctccac ggcatggaaa accgaattaa

46801 acaagttgct ctaaccttac ccggatgtaa atctgagaat cgtcaagcaa taagcttaat

46861 cagatttgca gatgattttg tcatcctgca caaagacctc gccgttatcc aaagatgtca

46921 gcagattatt agtgaatggt taagcgagtt ggggctggaa ttgaagccaa gtaaaacccg

46981 aatatcccat acacttaata tgtatgaagg taaggttggt tttgattttc taggtttcac

47041 tgttcgacaa tttcctgtag gaaaatatca cagtggtaaa agctcaagtg gaaaattact

47101 tggttacaaa actctgatta ccccaagtaa agcaaagctg aagatacacg cgcagaagat

47161 aggtaaattg attgatgagc ataaggcagt accacaatct gatttaatcg ctcatttgaa

47221 tcccgtcatc cgtggatgga caaactacta ctcatgtgtc gtcagtaaac gcatatttaa

47281 ccaggctgat acaacattat ttagtcagct aaaagcatgg gcagaacatc gtcaccctaa

47341 taaatcttcc cgatggagtt gtcaaaagta ttggcaaacc gtagggtctg ataattgggt

47401 atttaaaccc cataaccaga aaattcgcct actcaagcac cgtgaaactc gcattgtgag

47461 acacatacag gtgaaaggaa gccgtagccc gtttgatggt gactgggtgt actggagttc

47521 cagaatgggt aaacatcccg aagccccaat cagggtggca acactcctga aaatgcagaa

47581 aggaaagtgt actcactgtg gactgttttt tcaccatgaa gatttgatgg aaatcgacca

47641 taaaatcccc cgctctcaag gcggtaagga tagttatgac aaccttcaat tacttcatgg

47701 acattgccat gatgctaaaa cggcagaaga taaatgtgct gttacagttc cagagctaga

47761 tgaggattat ctcaacctta atccctttta actctgaact tagaggtgtg catgataagc

47821 accaaatcat tgaggagccg tgtgaaatta acgtttcacg cacggttttg tagccgagtc

47881 agggaggtga ctttctggct taggcatcca cctaaaaact gctgttctcc tgggtatgga

47941 aaaaaatcca ttgctaccaa caaagttaac atctcactat ctgtgaatct cggcgatggc

48001 cctggcaata acggtacata acggtagcct ttttgctgat accaatcatc tactagcaca

48061 aaaattgtcg tcaacagggt cgaaccgtct accatattca ttgggagacc tcaagctttg

48121 gtgtcgttac ctttatcttg cggtttcccc ttctttttta ctaccccaac tcacataagc

48181 cgtactttat aacaagttag ctggttggca acccaacaag ttgacaagtc ggctggttat

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[ORF sequence]

 

MTWIVEVQVAMYTSKTSFKTTVEWNAIPWQKLERKVFKLQKRIYKASQRGDVKAVRQL

QKTLLHSWSAKCLAVRRVTQDNRGKKTAGVDGRKNLSPKARLILVQSMKLGDKASPTR

RVWIPKPGSSGEKRPLSIPTLYDRALQSLVKLALEPEWEARFEPNSFGFRPGRNAHDA

MKAIFNTIKFKPKYVLDADIAKCFDKIDHNVLLSKLNTFPTISRQIRAWLKAGVIDFS

EYALREKSDHTTSMGVPQGGTISPLLANIALHGMENRIKQVALTLPGCKSENRQAISL

IRFADDFVILHKDLAVIQRCQQIISEWLSELGLELKPSKTRISHTLNMYEGKVGFDFL

GFTVRQFPVGKYHSGKSSSGKLLGYKTLITPSKAKLKIHAQKIGKLIDEHKAVPQSDL

IAHLNPVIRGWTNYYSCVVSKRIFNQADTTLFSQLKAWAEHRHPNKSSRWSCQKYWQT

VGSDNWVFKPHNQKIRLLKHRETRIVRHIQVKGSRSPFDGDWVYWSSRMGKHPEAPIR

VATLLKMQKGKCTHCGLFFHHEDLMEIDHKIPRSQGGKDSYDNLQLLHGHCHDAKTAE

DKCAVTVPELDEDYLNLNPF

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[Secondary structure]

 

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