Ni.ha.I1-1

Note: Redundant intron copies found in

CP000319 Nitrobacter hamburgensis X14 (4263301-4265212)

Sequence from Genbank entry (intron is on the antisense strand).

The boundaries of the intron are marked as red and ORF is marked

as blue, with start and stop codons underlined.

Intron on antisense strand

3' end

gtagagt cgaggacggg cgcgatggca ttgccccgtt
75481 tcccgtcccc gctcatcaaa ccggacgtgc ggatttcccg catccggctt tccgactggc
75541 ttcaccgcaa ggcccacggc gacgaccgac tgcgctcgcg tcgaaggcat cggacggcca
75601 attccccata gacatgttct cgggagaact ggtccgctcc acgcccctgc actttgtgtc
75661 gttgacggag gaagtgccgc gttcggtcat agacatgctg atcgacggcc tcgtatgccg
75721 acgcgagggc gccgtaggag aagtaggccg accaaccgcg cagaacgcgg ttcaaccgtg
75781 ctcgcacttc gtcccaagcg cccttgttgc cgggcaccag cagttcgcca atcttcacct
75841 tgacccgctg catgctcttc ttggacgagc tcgcccccaa gtaccagcga cctccattgg
75901 gaaggtggcg cggtcccagt gtgtagccaa ggaagtcgaa gccttcacgc cgggcattct
75961 tcaccgaggt tttcgcctcg ttaagcgtca gcccgagttt cgtcatcacc gccctcgtcc
76021 aggtcagagc ctcttccgcg tgtccgcggc tgaggatgac gaagtcgtcg gcataggaga
76081 tgacatgtgc gtggaacacc tcgccgcgcc ccgtcaaccg ccaatgcttc aggaatcggt
76141 tcatgtagat gacggagagc aacggactgg cgaccccacc ctggggggtg ccgcgagtgc
76201 tgctcttgcc gccgctcatg tgccgtttcc cgtcgccatc ccgttcctcg actggcactt
76261 gcagccacag cttgatcagc cgcagcacat tccggtcgag aacgcggcgg gccaccgatc
76321 ggaggaggtc cgcgtgcggg atcgtgtcga aatacttcga caagtcggca tcgactacgt
76381 cggtgtagcc ccggcatagc agccggtgcg tttccttgac ggcatcgatc gcgctccgac
76441 gcggccgata gccgtaggca ctgtcctcga agcccgcctc gaagattggc tccagcacga
76501 tcttggctgc ggcctgaacc acccggtccc ggatcgtcgg gatgccgagc ggacgttcgc
76561 cgccgccagg ctttgggatc atcacccgcc gcactggatc aggctggtag gtcttcgaga
76621 cgaggtcctc gcgcaagccc gccagccacg cgtctacacc cgctccctcg atctgtccga
76681 aggtcatccc gtccacgcct ggcgcacccg cattggcgcg ggcaagcgta taggcccgca
76741 gaaggacgtc ctcacgacag attttgtcgt agagaatgta aaagcggaaa gcaggctcag
76801 ccttcgcctt gcagtacagc tttctctgaa ggctcctgat cttatcgggt gtttcgaggc
76861 tcatcgccaa tcacccccac ttcgccaact tcgaaagcgc accagaagtc aggatccttt
76921 cctctgccgg cgttacccgg cttcgacggt catacgaccc tgtccgacac ccgtccggtc
76981 caccgctccg aagcggtgtt gaagccgcga cctccgaccc ggatgggtct ccctcgatta
77041 cccgcatcac cattccaacg tgctgtgtcc aataccccgg cagaccagac aggtgcgttt
77101 gtcgattgct tccctgtctg cgcggccttc cccgagcaaa aggcgggtcg gcgtctgcat
77161 cgactctttc gaggcctgct cgaacttcac tcacgttacg gcccgttgga tcgctcggcc
77221 gcccaaggcg gcctttgtca cgaggcttcg acgaggccag ttgcccggcc gcgccgctcg
77281 tcagcttccg gatcaatcga caactctccg gatggaacct tcctccatag atgatgcgcg
77341 ccttcgaggc gcac

5' end

Intron on sense strand

5' end

1 gtgcgcctcg aaggcgcgca tcatctatgg aggaaggttc catccggaga gttgtcgatt

61 gatccggaag ctgacgagcg gcgcggccgg gcaactggcc tcgtcgaagc ctcgtgacaa

121 aggccgcctt gggcggccga gcgatccaac gggccgtaac gtgagtgaag ttcgagcagg

181 cctcgaaaga gtcgatgcag acgccgaccc gccttttgct cggggaaggc cgcgcagaca

241 gggaagcaat cgacaaacgc acctgtctgg tctgccgggg tattggacac agcacgttgg

301 aatggtgatg cgggtaatcg agggagaccc atccgggtcg gaggtcgcgg cttcaacacc

361 gcttcggagc ggtggaccgg acgggtgtcg gacagggtcg tatgaccgtc gaagccgggt

421 aacgccggca gaggaaagga tcctgacttc tggtgcgctt tcgaagttgg cgaagtgggg

481 gtgattggcg atgagcctcg aaacacccga taagatcagg agccttcaga gaaagctgta

541 ctgcaaggcg aaggctgagc ctgctttccg cttttacatt ctctacgaca aaatctgtcg

601 tgaggacgtc cttctgcggg cctatacgct tgcccgcgcc aatgcgggtg cgccaggcgt

661 ggacgggatg accttcggac agatcgaggg agcgggtgta gacgcgtggc tggcgggctt

721 gcgcgaggac ctcgtctcga agacctacca gcctgatcca gtgcggcggg tgatgatccc

781 aaagcctggc ggcggcgaac gtccgctcgg catcccgacg atccgggacc gggtggttca

841 ggccgcagcc aagatcgtgc tggagccaat cttcgaggcg ggcttcgagg acagtgccta

901 cggctatcgg ccgcgtcgga gcgcgatcga tgccgtcaag gaaacgcacc ggctgctatg

961 ccggggctac accgacgtag tcgatgccga cttgtcgaag tatttcgaca cgatcccgca

1021 cgcggacctc ctccgatcgg tggcccgccg cgttctcgac cggaatgtgc tgcggctgat

1081 caagctgtgg ctgcaagtgc cagtcgagga acgggatggc gacgggaaac ggcacatgag

1141 cggcggcaag agcagcactc gcggcacccc ccagggtggg gtcgccagtc cgttgctctc

1201 cgtcatctac atgaaccgat tcctgaagca ttggcggttg acggggcgcg gcgaggtgtt

1261 ccacgcacat gtcatctcct atgccgacga cttcgtcatc ctcagccgcg gacacgcgga

1321 agaggctctg acctggacga gggcggtgat gacgaaactc gggctgacgc ttaacgaggc

1381 gaaaacctcg gtgaagaatg cccggcgtga aggcttcgac ttccttggct acacactggg

1441 accgcgccac cttcccaatg gaggtcgctg gtacttgggg gcgagctcgt ccaagaagag

1501 catgcagcgg gtcaaggtga agattggcga actgctggtg cccggcaaca agggcgcttg

1561 ggacgaagtg cgagcacggt tgaaccgcgt tctgcgcggt tggtcggcct acttctccta

1621 cggcgccctc gcgtcggcat acgaggccgt cgatcagcat gtctatgacc gaacgcggca

1681 cttcctccgt caacgacaca aagtgcaggg gcgtggagcg gaccagttct cccgagaaca

1741 tgtctatggg gaattggccg tccgatgcct tcgacgcgag cgcagtcggt cgtcgccgtg

1801 ggccttgcgg tgaagccagt cggaaagccg gatgcgggaa atccgcacgt ccggtttgat

1861 gagcggggac gggaaacggg gcaatgccat cgcgcccgtc ctcgactcta c

3' end

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[Intron and flanking sequence]

75121 gcgcacgagt ctgcgccagc ggatcatcca gccgaaagtt cgttcgatca cccagcggcg
75181 cggcaggact tcgaagccct tctgcccgtc gcggcgtcgg atgatttcga tcacgaactg
75241 cagataggcg gccttgtcca tcagtttcag tcggtcgtag gcggcgtcgg cgaacagatg
75301 ttttatccac ggccagcgtt tgcgaatcgc atcgagggtc gcttgcgcgc ctgcgctgtc
75361 ggagatgtcg gcggttgtca gattgaccat cagcaatcgc ccgtccgtgt cgaccgcgat
75421 gtggcgcttt cggccgacga tttgtagagt cgaggacggg cgcgatggca ttgccccgtt
75481 tcccgtcccc gctcatcaaa ccggacgtgc ggatttcccg catccggctt tccgactggc
75541 ttcaccgcaa ggcccacggc gacgaccgac tgcgctcgcg tcgaaggcat cggacggcca
75601 attccccata gacatgttct cgggagaact ggtccgctcc acgcccctgc actttgtgtc
75661 gttgacggag gaagtgccgc gttcggtcat agacatgctg atcgacggcc tcgtatgccg
75721 acgcgagggc gccgtaggag aagtaggccg accaaccgcg cagaacgcgg ttcaaccgtg
75781 ctcgcacttc gtcccaagcg cccttgttgc cgggcaccag cagttcgcca atcttcacct
75841 tgacccgctg catgctcttc ttggacgagc tcgcccccaa gtaccagcga cctccattgg
75901 gaaggtggcg cggtcccagt gtgtagccaa ggaagtcgaa gccttcacgc cgggcattct
75961 tcaccgaggt tttcgcctcg ttaagcgtca gcccgagttt cgtcatcacc gccctcgtcc
76021 aggtcagagc ctcttccgcg tgtccgcggc tgaggatgac gaagtcgtcg gcataggaga
76081 tgacatgtgc gtggaacacc tcgccgcgcc ccgtcaaccg ccaatgcttc aggaatcggt
76141 tcatgtagat gacggagagc aacggactgg cgaccccacc ctggggggtg ccgcgagtgc
76201 tgctcttgcc gccgctcatg tgccgtttcc cgtcgccatc ccgttcctcg actggcactt
76261 gcagccacag cttgatcagc cgcagcacat tccggtcgag aacgcggcgg gccaccgatc
76321 ggaggaggtc cgcgtgcggg atcgtgtcga aatacttcga caagtcggca tcgactacgt
76381 cggtgtagcc ccggcatagc agccggtgcg tttccttgac ggcatcgatc gcgctccgac
76441 gcggccgata gccgtaggca ctgtcctcga agcccgcctc gaagattggc tccagcacga
76501 tcttggctgc ggcctgaacc acccggtccc ggatcgtcgg gatgccgagc ggacgttcgc
76561 cgccgccagg ctttgggatc atcacccgcc gcactggatc aggctggtag gtcttcgaga
76621 cgaggtcctc gcgcaagccc gccagccacg cgtctacacc cgctccctcg atctgtccga
76681 aggtcatccc gtccacgcct ggcgcacccg cattggcgcg ggcaagcgta taggcccgca
76741 gaaggacgtc ctcacgacag attttgtcgt agagaatgta aaagcggaaa gcaggctcag
76801 ccttcgcctt gcagtacagc tttctctgaa ggctcctgat cttatcgggt gtttcgaggc
76861 tcatcgccaa tcacccccac ttcgccaact tcgaaagcgc accagaagtc aggatccttt
76921 cctctgccgg cgttacccgg cttcgacggt catacgaccc tgtccgacac ccgtccggtc
76981 caccgctccg aagcggtgtt gaagccgcga cctccgaccc ggatgggtct ccctcgatta
77041 cccgcatcac cattccaacg tgctgtgtcc aataccccgg cagaccagac aggtgcgttt
77101 gtcgattgct tccctgtctg cgcggccttc cccgagcaaa aggcgggtcg gcgtctgcat
77161 cgactctttc gaggcctgct cgaacttcac tcacgttacg gcccgttgga tcgctcggcc
77221 gcccaaggcg gcctttgtca cgaggcttcg acgaggccag ttgcccggcc gcgccgctcg
77281 tcagcttccg gatcaatcga caactctccg gatggaacct tcctccatag atgatgcgcg
77341 ccttcgaggc gcactcttgc cggcgtcata gccgcgcgcc tcgctatgcg gggctttgac
77401 cgactggctg tcgatcaccg cagccgacgg gcttgcttcg cgaccttgcc gttcccgatc
77461 gagcatcagt tcgacgtcat ggatcgtctg gaacaagaag cgccgcgcca actcgcggaa
77521 ccagccataa accgtccgcc agtgaccgaa atgcacgggc agcatccgcc agccgcagcc
77581 cgagcgcacg agatagcgca ccgcgttgat cacttcgcga aattcgactt cacgcggcca
77641 gccccggcgt cctggtttcg gcatcagcgg cgcgatccgt tcccattcct cgtccgtcag
77701 atcagaccga tatcgcttgg tctttcgggc gatcctggcc atctggcttc gctgcttgcg

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[ORF sequence]

MSLETPDKIRSLQRKLYCKAKAEPAFRFYILYDKICREDVLLRAYTLARANAGAPGVD

GMTFGQIEGAGVDAWLAGLREDLVSKTYQPDPVRRVMIPKPGGGERPLGIPTIRDRVV

QAAAKIVLEPIFEAGFEDSAYGYRPRRSAIDAVKETHRLLCRGYTDVVDADLSKYFDT

IPHADLLRSVARRVLDRNVLRLIKLWLQVPVEERDGDGKRHMSGGKSSTRGTPQGGVA

SPLLSVIYMNRFLKHWRLTGRGEVFHAHVISYADDFVILSRGHAEEALTWTRAVMTKL

GLTLNEAKTSVKNARREGFDFLGYTLGPRHLPNGGRWYLGASSSKKSMQRVKVKIGEL

LVPGNKGAWDEVRARLNRVLRGWSAYFSYGALASAYEAVDQHVYDRTRHFLRQRHKVQ

GRGADQFSREHVYGELAVRCLRRERSRSSPWALR

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[Secondary structure]

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