[Back to introns by organism]   [Back to home page]

Information of P.p.I3 intron  (Format of information for each intron)

[Intron sequence]

[Intron and flanking sequence]

[ORF sequence]

[Secondary structure]

Note: Multiple insertions

AE016788 Pseudomonas putida KT2440 (164905-166824)

AE016788 Pseudomonas putida KT2440 (120526-122445)

AE016785 Pseudomonas putida KT2440 (268790-270709)

AE016780 Pseudomonas putida KT2440 (260359-262278)

AE016780 Pseudomonas putida KT2440 (10969-12888)

AE016778 Pseudomonas putida KT2440 (221325-223244)

AE016778 Pseudomonas putida KT2440 (225185-227104)

[Intron sequence]

Sequence from Genbank entry.  Intron is identified in red.  The ORF
is identified in blue with start and stop codons underlined.  

5' end

                                           gtgcgcc aggcatggcg cgttgcgcgt
137881 aagcgcaacc cgcttggttg tggtggccaa gtgggtgact tggaggtgaa agtcctctac
137941 acacccggca aggggaagtg ttagccggag gcaagggtgt cgcgggtgac cgcgaatctg
138001 aaggaagccc gaggcaaaat gctggcctga cgaacaggaa gcggatagag gcggcacagc
138061 ggggtgaggt ggcacaaatc gccaaagccc aatacttgca cggaacgctg tgacgtagat
138121 ccgacaggca taagcaggaa ggtcgcgcga attaccctgg gagatctgta cgtttgccat
138181 tgtgctaccg cgcgtcgaaa ggcgacggga tgagcgtgca gaagtcagcc gaagccgtag
138241 taagtggcgg ttaaccgcgc caccaagggc cgaacaggtt atgccgccag taggcgtcgc
138301 cgtctcgttg gtaaccgtaa tgcagaaatt tcccacagcg gaaactgtca tcccgagctc
138361 cggccagaag ccgagggtga cgcctgacag tgcaaaggta tcgacggcgt ccgtgacgtg
138421 gacgaacgcg gagccggaca cgctgatgga gcgggtgctt gcaccggcca acctcaggcg
138481 tgcgtatcaa cgcgtggtta gcaacaaggg ggctccgggt gccgatggca taacggtcgc
138541 tgacttggcg ggctacgtga aacagtattg gccaaccctc aaggccaggt tgctggccgg
138601 tgaataccat ccccaagcag tgcgagcggt tgaaataccc aagccgcagg gcggcacacg
138661 gcaactgggt atccccagcg tcgtggatcg cctgatccag caagcactgc agcagcagct
138721 cacacctatc ttcgacccac tgttctcgga ctacagctat ggttttcgtc cgggcagaag
138781 tacgcatcaa gccatcgaga tggctcgtgc tcatgtgaca gcgggacacc gctggtgcgt
138841 ggaaatcgat ctggagaagt tcttcgatcg agtcaaccac gacatcctga tggcctgtat
138901 cgagcgccgg gtcaaagata agtgcgtact caggcttatt cgccgctacc ttgaagccgg
138961 gatcatgtcg ggcggtgtcg tcagcccacg gcaggagggg acgccgcaag gcggcccgct
139021 ttcgccgttg ctgtcgaata tcctgctcga cgaactcgac cgcgagctgg agcggcgggg
139081 ccatcgcttc gtacgttatg ccgatgatgc gaacatctat gtacgcagtc cccgggccgg
139141 cgaacgggtg ttggtcagcg tcgagcgctt cctgagagaa cgtctgaagc tgacggtgaa
139201 caggaagaaa agccaagtgg caagggcgtg gaagtgcgac tacctaggct atgggatgag
139261 ctggcaccag cagccaaggc tgcgcgtggc aaggatgagc ctagaccgct tacgcgaccg
139321 gctcagaatg ctgctgcgca gcgtacgggc tcgcaaaatg gcgactgtca tcgagcggat
139381 caaccccgtc ctgagaggct gggctagcta cttcaagctc agccagagca agcggccgct
139441 tgaggaactg gatggttggg tcaggcacaa actccgctgc gtcatctggc gtcaatggaa
139501 gcagcctccc acgaggctga gaaacttgat gcgcctaggg ttgagcgagg agcgtgccaa
139561 caagtcagcc ttcaatggcc gaggtccatg gtggaattcg ggagcgcaac atatgaacta
139621 cgcgctgcca aagaaactgt gggaccggct cgggctggtc tcgatactgg atacgattaa
139681 ccggcttagc cgcgtaacct gaaccgccgt gtacggaacc gtacgcacgg tggtgtgaga
139741 ggacggcggg tgtgaatccg cctcctactc gat

3' end  

[top]

[Intron and flanking sequence]

137401 gggaaggatg tagcggatgt agccgccctg ggtggccagc cagcgacggc gcattgtgcg
137461 atcacggcca gcggcaaggc cgcagatggc agcggcagca ttgtctgcac cctggtggat
137521 gcgcctgcca acgcgctggg caaggccctg accctgacgc gttcgaccag cggctgggcg
137581 tgcacgaccg acatcgagga cgacctggcg cccaaagggt gcaagggggc ttgagggcag
137641 ggcaataaac cagcggaaac aggggtttgc gttacgggtg tgagcagtgg tacgttgcgc
137701 tacacgccgg tgtagctcag tcggtagagc agcgcactcg taacgcgaag gtcgcaggtt
137761 cgattcctgt ctccggcacc agaatcagtt ggtctatggc gatttctcgc tacctggcac
137821 caatagaagc ccgccttgtg cgggcttttt tgtgtgcgcc aggcatggcg cgttgcgcgt
137881 aagcgcaacc cgcttggttg tggtggccaa gtgggtgact tggaggtgaa agtcctctac
137941 acacccggca aggggaagtg ttagccggag gcaagggtgt cgcgggtgac cgcgaatctg
138001 aaggaagccc gaggcaaaat gctggcctga cgaacaggaa gcggatagag gcggcacagc
138061 ggggtgaggt ggcacaaatc gccaaagccc aatacttgca cggaacgctg tgacgtagat
138121 ccgacaggca taagcaggaa ggtcgcgcga attaccctgg gagatctgta cgtttgccat
138181 tgtgctaccg cgcgtcgaaa ggcgacggga tgagcgtgca gaagtcagcc gaagccgtag
138241 taagtggcgg ttaaccgcgc caccaagggc cgaacaggtt atgccgccag taggcgtcgc
138301 cgtctcgttg gtaaccgtaa tgcagaaatt tcccacagcg gaaactgtca tcccgagctc
138361 cggccagaag ccgagggtga cgcctgacag tgcaaaggta tcgacggcgt ccgtgacgtg
138421 gacgaacgcg gagccggaca cgctgatgga gcgggtgctt gcaccggcca acctcaggcg
138481 tgcgtatcaa cgcgtggtta gcaacaaggg ggctccgggt gccgatggca taacggtcgc
138541 tgacttggcg ggctacgtga aacagtattg gccaaccctc aaggccaggt tgctggccgg
138601 tgaataccat ccccaagcag tgcgagcggt tgaaataccc aagccgcagg gcggcacacg
138661 gcaactgggt atccccagcg tcgtggatcg cctgatccag caagcactgc agcagcagct
138721 cacacctatc ttcgacccac tgttctcgga ctacagctat ggttttcgtc cgggcagaag
138781 tacgcatcaa gccatcgaga tggctcgtgc tcatgtgaca gcgggacacc gctggtgcgt
138841 ggaaatcgat ctggagaagt tcttcgatcg agtcaaccac gacatcctga tggcctgtat
138901 cgagcgccgg gtcaaagata agtgcgtact caggcttatt cgccgctacc ttgaagccgg
138961 gatcatgtcg ggcggtgtcg tcagcccacg gcaggagggg acgccgcaag gcggcccgct
139021 ttcgccgttg ctgtcgaata tcctgctcga cgaactcgac cgcgagctgg agcggcgggg
139081 ccatcgcttc gtacgttatg ccgatgatgc gaacatctat gtacgcagtc cccgggccgg
139141 cgaacgggtg ttggtcagcg tcgagcgctt cctgagagaa cgtctgaagc tgacggtgaa
139201 caggaagaaa agccaagtgg caagggcgtg gaagtgcgac tacctaggct atgggatgag
139261 ctggcaccag cagccaaggc tgcgcgtggc aaggatgagc ctagaccgct tacgcgaccg
139321 gctcagaatg ctgctgcgca gcgtacgggc tcgcaaaatg gcgactgtca tcgagcggat
139381 caaccccgtc ctgagaggct gggctagcta cttcaagctc agccagagca agcggccgct
139441 tgaggaactg gatggttggg tcaggcacaa actccgctgc gtcatctggc gtcaatggaa
139501 gcagcctccc acgaggctga gaaacttgat gcgcctaggg ttgagcgagg agcgtgccaa
139561 caagtcagcc ttcaatggcc gaggtccatg gtggaattcg ggagcgcaac atatgaacta
139621 cgcgctgcca aagaaactgt gggaccggct cgggctggtc tcgatactgg atacgattaa
139681 ccggcttagc cgcgtaacct gaaccgccgt gtacggaacc gtacgcacgg tggtgtgaga
139741 ggacggcggg tgtgaatccg cctcctactc gattgcgcga aatcagacct gccttgtgtg
139801 cccgctatgt gaagcaacct tcggttgcgt tacatagcgg acacacagcg tcgtgacttg
139861 ccggggaaac tacttggtcg cggcgtgtgg agcagagact gtaggggagc gttgacagtg
139921 gcggtttcaa gctagcttgg cggtcacgct aagccgagtg aggcattcga tcctgctagc
139981 gacgcatttg cttagctaag gccacaatgg cgaagcccag gattttcatg aatgtggccg
140041 tccagctcag gagcagaata gctccgtgtt tgaatgctcc gggtggtacc aggctggtta
140101 cgccggtatc ccaacctgcg ggctgggcgt tttcattttc gatgcgagct aagacatccc
140161 gctcccactg agcgcagttt gctatccagt tctgatccgt ggtggtcacg attttttgga
140221 cattcgcgta gtctcctgtg aaacggtgca cggtgtagtg atagttggag cagccatcac
140281 tgcgactgta cttttcgagg tgtacattca agacggcgtt gcctccgcgc tccatgcttg
140341 ctctctctag tagagcccgt gcctcattag gattgtttga ttcagcccaa ccactcccaa

[top]

[ORF sequence]

MPPVGVAVSLVTVMQKFPTAETVIPSSGQKPRVTPDSAKVSTASVTWTNAEPDTLMER

VLAPANLRRAYQRVVSNKGAPGADGITVADLAGYVKQYWPTLKARLLAGEYHPQAVRA

VEIPKPQGGTRQLGIPSVVDRLIQQALQQQLTPIFDPLFSDYSYGFRPGRSTHQAIEM

ARAHVTAGHRWCVEIDLEKFFDRVNHDILMACIERRVKDKCVLRLIRRYLEAGIMSGG

VVSPRQEGTPQGGPLSPLLSNILLDELDRELERRGHRFVRYADDANIYVRSPRAGERV

LVSVERFLRERLKLTVNRKKSQVARAWKCDYLGYGMSWHQQPRLRVARMSLDRLRDRL

RMLLRSVRARKMATVIERINPVLRGWASYFKLSQSKRPLEELDGWVRHKLRCVIWRQW

KQPPTRLRNLMRLGLSEERANKSAFNGRGPWWNSGAQHMNYALPKKLWDRLGLVSILD

TINRLSRVT

top]

[Secondary structure]

[top]

| Introduction | Intron secondary structure | Intron ORF structure | Introns listed by organism | Bacterial intron fragments | Alignment of insertion sequence |

| Phylogenetic tree of intron ORFs | How to find group II intron | Site map | Contact us |