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Information of P.s.I1 intron (Format of information for each intron)
[Intron and flanking sequence]
Note: Multiple insertions
AE016868 Pseudomonas syringae pv (4730-6560)
Sequence from Genbank entry (intron is on the antisense strand).
The boundaries of the intron are marked as red and ORF is marked
as blue, with start and stop codons underlined.
Intron on the antisense strand
5' end
atcgg catagggggc agccatctgg ctgcacccct gccacaccac ccggcatgcg
178261 ggtccgcacc gggcggttcg agaggttgag gtcagtagag tcgaggcaga cccaaccgat
178321 caaaccacgc taccgtcagc acaccatgga tcagcccggc actgttgtgc caggtcctat
178381 ggctatcgct ggctattgct gccgccaagt cagaatttgc acccagcttg cgaagctctc
178441 ggtaggtggt tttgccagtc ttccattgtt tgagctgaat tgccctgagc cttcgacgta
178501 tccagccgtc cagactcttc cataaaccgg gagcctgaga caatccaaag tacgctttcc
178561 agccgaggag gtagggcctc aggttttcca ccacttgcgg caggctgcga ccgccactac
178621 gcggtgtcag cccccggatg cgatgtttga atacctgtag cgccttgagt gctacccgcc
178681 gtttgacctc gcctttggga gactgccaga agctgaatcc cagaaacttg cggccaaacg
178741 cactggcaac ggcgctcttg ctctcgttca cgcgcaaccc aagacggccg taaaggcgac
178801 ggagcaatgc catcacccgc tgtccggctt tggggctacg tacgtaaacg ttcgcatcgt
178861 ccgcgtacct gacgaagcaa tggcctcgtc gctccagctc tttgtctacc tcgtccagca
178921 ccacattggc cagcagcggt gaaagtggtc caccttgcgg tgtgcccctc gtgctggtca
178981 tgaccatgcc ttcgatcaat gccccactgt tcagataagc tcgaatcaaa cgtaaaacgt
179041 cgcgatcctt cacttttctg cccagccggg cgatcagcac atcgtgctcg acgcagtcga
179101 aaaactgctc cagatcgaca tcgaccacaa tttgccgccc tgagtggatg tattgctgtg
179161 ccgccaaaac cgcttggtgt gcactgcgct ccggacgaaa accatagctg tggttgctga
179221 agtcagggtc cagcaagggc tgcaatactt gcagtaatgc ttgctgaata agtctgtccg
179281 tcaccgtagg aatgcccagc ttgcgctcgc cgccaccggg tttggggatc aagactcgcc
179341 gaaccggatc aggccggtac gtccctgcca acaactgtgc gcgtatcccg ggccatgccg
179401 tcttcaggtg ctccgctgtt tcgacgatcc caagaccgtc gacaccggca gcacccttat
179461 tggcgcggac ctgtttaaac gccagttgca ggttgtctct tgtcagggca gcttgcagca
179521 accctgaccc tgtgggggtt gagtcattgc gcggacagcc ggcttcatcg ctggatgctt
179581 tacgcggggt ttcaccctct gcaattgcgt cccgccccgg tttgccgggc atctgatgca
179641 tggcctgctg tatcgtcatg tcaaacctca cttcttctcg tttggtcctt cgctgcagcg
179701 cagctactat gaccgctgct gacttctcgc tccggctcac accgtcgccc tttcaggcat
179761 gaggcgagat ctccccaggt aagaacgcca tccttcaccg cacaaccgcc gcatttacgt
179821 acccggcact taggccacaa gagctttgca gtcacttggc tgctcgccct gtccggatcc
179881 gcctcgaatg cgatttgtgt acctcggctc gcggtttacg ctccacgctt cctccccaca
179941 gtcggtcgcc cttctgcagt tgcgcttcgc ttcattcact gtggccagct taagagagga
180001 ctttcacctc taggatggcg cccatgctgg gcgcac
3' end
Intron on the sense strand
5' end
1 gtgcgcccag catgggcgcc atcctagagg tgaaagtcct ctcttaagct ggccacagtg
61 aatgaagcga agcgcaactg cagaagggcg accgactgtg gggaggaagc gtggagcgta
121 aaccgcgagc cgaggtacac aaatcgcatt cgaggcggat ccggacaggg cgagcagcca
181 agtgactgca aagctcttgt ggcctaagtg ccgggtacgt aaatgcggcg gttgtgcggt
241 gaaggatggc gttcttacct ggggagatct cgcctcatgc ctgaaagggc gacggtgtga
301 gccggagcga gaagtcagca gcggtcatag tagctgcgct gcagcgaagg accaaacgag
361 aagaagtgag gtttgacatg acgatacagc aggccatgca tcagatgccc ggcaaaccgg
421 ggcgggacgc aattgcagag ggtgaaaccc cgcgtaaagc atccagcgat gaagccggct
481 gtccgcgcaa tgactcaacc cccacagggt cagggttgct gcaagctgcc ctgacaagag
541 acaacctgca actggcgttt aaacaggtcc gcgccaataa gggtgctgcc ggtgtcgacg
601 gtcttgggat cgtcgaaaca gcggagcacc tgaagacggc atggcccggg atacgcgcac
661 agttgttggc agggacgtac cggcctgatc cggttcggcg agtcttgatc cccaaacccg
721 gtggcggcga gcgcaagctg ggcattccta cggtgacgga cagacttatt cagcaagcat
781 tactgcaagt attgcagccc ttgctggacc ctgacttcag caaccacagc tatggttttc
841 gtccggagcg cagtgcacac caagcggttt tggcggcaca gcaatacatc cactcagggc
901 ggcaaattgt ggtcgatgtc gatctggagc agtttttcga ctgcgtcgag cacgatgtgc
961 tgatcgcccg gctgggcaga aaagtgaagg atcgcgacgt tttacgtttg attcgagctt
1021 atctgaacag tggggcattg atcgaaggca tggtcatgac cagcacgagg ggcacaccgc
1081 aaggtggacc actttcaccg ctgctggcca atgtggtgct ggacgaggta gacaaagagc
1141 tggagcgacg aggccattgc ttcgtcaggt acgcggacga tgcgaacgtt tacgtacgta
1201 gccccaaagc cggacagcgg gtgatggcat tgctccgtcg cctttacggc cgtcttgggt
1261 tgcgcgtgaa cgagagcaag agcgccgttg ccagtgcgtt tggccgcaag tttctgggat
1321 tcagcttctg gcagtctccc aaaggcgagg tcaaacggcg ggtagcactc aaggcgctac
1381 aggtattcaa acatcgcatc cgggggctga caccgcgtag tggcggtcgc agcctgccgc
1441 aagtggtgga aaacctgagg ccctacctcc tcggctggaa agcgtacttt ggattgtctc
1501 aggctcccgg tttatggaag agtctggacg gctggatacg tcgaaggctc agggcaattc
1561 agctcaaaca atggaagact ggcaaaacca cctaccgaga gcttcgcaag ctgggtgcaa
1621 attctgactt ggcggcagca atagccagcg atagccatag gacctggcac aacagtgccg
1681 ggctgatcca tggtgtgctg acggtagcgt ggtttgatcg gttgggtctg cctcgactct
1741 actgacctca acctctcgaa ccgcccggtg cggacccgca tgccgggtgg tgtggcaggg
1801 gtgcagccag atggctgccc cctatgccga t
3' end
[Intron and flanking sequence]
177661 cagcaagaag cgcaaaggca tggccaaggc cgccgaagaa agcgcccgtt acgaaaacga
177721 gttgcgctcg ccgagcgaga tcaacaagcg cattcgccaa ctggaagaaa aaatgtacca
177781 actggcccgc gacctggaat tcgaggccgc cgcgcaaatg cgcgacgaga tcggcaaatt
177841 gcgcgagcgg ttgttggcgg tttgaagcat tggacacgcc acctctcatg tcgatgctcc
177901 gcgtcggcat gcagttgtga cgctctgcgt cacaagtctt tagtgccgca cgatgtcttg
177961 ctgcgcctgc atgaggccgc catacgcgct tttcgatcac ggtggcactg acgacgcaga
178021 gtgcgacgta agtgacggct gagtcctggc gctgatccgg gggtagcatg gcaggacgcc
178081 aggctagccg caccggacca tggatggtcc gttgcggcga cccccggatc agtgacaggg
178141 cgaaggaacc cgacgaagtc gggccggaaa cggagccagg ggctttggtc actttggccc
178201 catcaatcgg catagggggc agccatctgg ctgcacccct gccacaccac ccggcatgcg
178261 ggtccgcacc gggcggttcg agaggttgag gtcagtagag tcgaggcaga cccaaccgat
178321 caaaccacgc taccgtcagc acaccatgga tcagcccggc actgttgtgc caggtcctat
178381 ggctatcgct ggctattgct gccgccaagt cagaatttgc acccagcttg cgaagctctc
178441 ggtaggtggt tttgccagtc ttccattgtt tgagctgaat tgccctgagc cttcgacgta
178501 tccagccgtc cagactcttc cataaaccgg gagcctgaga caatccaaag tacgctttcc
178561 agccgaggag gtagggcctc aggttttcca ccacttgcgg caggctgcga ccgccactac
178621 gcggtgtcag cccccggatg cgatgtttga atacctgtag cgccttgagt gctacccgcc
178681 gtttgacctc gcctttggga gactgccaga agctgaatcc cagaaacttg cggccaaacg
178741 cactggcaac ggcgctcttg ctctcgttca cgcgcaaccc aagacggccg taaaggcgac
178801 ggagcaatgc catcacccgc tgtccggctt tggggctacg tacgtaaacg ttcgcatcgt
178861 ccgcgtacct gacgaagcaa tggcctcgtc gctccagctc tttgtctacc tcgtccagca
178921 ccacattggc cagcagcggt gaaagtggtc caccttgcgg tgtgcccctc gtgctggtca
178981 tgaccatgcc ttcgatcaat gccccactgt tcagataagc tcgaatcaaa cgtaaaacgt
179041 cgcgatcctt cacttttctg cccagccggg cgatcagcac atcgtgctcg acgcagtcga
179101 aaaactgctc cagatcgaca tcgaccacaa tttgccgccc tgagtggatg tattgctgtg
179161 ccgccaaaac cgcttggtgt gcactgcgct ccggacgaaa accatagctg tggttgctga
179221 agtcagggtc cagcaagggc tgcaatactt gcagtaatgc ttgctgaata agtctgtccg
179281 tcaccgtagg aatgcccagc ttgcgctcgc cgccaccggg tttggggatc aagactcgcc
179341 gaaccggatc aggccggtac gtccctgcca acaactgtgc gcgtatcccg ggccatgccg
179401 tcttcaggtg ctccgctgtt tcgacgatcc caagaccgtc gacaccggca gcacccttat
179461 tggcgcggac ctgtttaaac gccagttgca ggttgtctct tgtcagggca gcttgcagca
179521 accctgaccc tgtgggggtt gagtcattgc gcggacagcc ggcttcatcg ctggatgctt
179581 tacgcggggt ttcaccctct gcaattgcgt cccgccccgg tttgccgggc atctgatgca
179641 tggcctgctg tatcgtcatg tcaaacctca cttcttctcg tttggtcctt cgctgcagcg
179701 cagctactat gaccgctgct gacttctcgc tccggctcac accgtcgccc tttcaggcat
179761 gaggcgagat ctccccaggt aagaacgcca tccttcaccg cacaaccgcc gcatttacgt
179821 acccggcact taggccacaa gagctttgca gtcacttggc tgctcgccct gtccggatcc
179881 gcctcgaatg cgatttgtgt acctcggctc gcggtttacg ctccacgctt cctccccaca
179941 gtcggtcgcc cttctgcagt tgcgcttcgc ttcattcact gtggccagct taagagagga
180001 ctttcacctc taggatggcg cccatgctgg gcgcacaagt gactcgccga ggggcgaaaa
180061 ggtgacctga gtcgaactcc agttcacctg acaccacaga accgccttgt gacgcagagc
180121 gtcacgaaag gcattcccac gcagagcgtg cggaacgata ggtgttccgg cgattacctt
180181 tcacgctgga gccgcatgcc cccggcctgt taacattccg cgcttgatcg acctatttcg
180241 ggattttcca tgaccaccgt tcgtacccgc atcgcgccat cgcccaccgg cgaccctcac
180301 gttggcacgg cctacatcgc gctgttcaac tactgctttg ccaaacagca cggcggcgag
180361 tttattctgc gcattgaaga caccgatcag ttgcgctcga cccgcgagtc cgaacagcag
180421 attttcgacg cactgcgctg gctgggcatc gaatggagcg aaggcccgga cgtcggcggt
180481 ccacacggtc cgtatcgtca aagcgaacgg ggcgatatct accagaaata cgcgcagcaa
180541 ctggtcgaat tgggtcatgc cttcccgtgt ttctgtaccg ccgaagaact cgacgagatg
MTIQQAMHQMPGKPGRDAIAEGETPRKASSDEAGCPRNDSTPTGSGLLQAALTRDNLQ
LAFKQVRANKGAAGVDGLGIVETAEHLKTAWPGIRAQLLAGTYRPDPVRRVLIPKPGG
GERKLGIPTVTDRLIQQALLQVLQPLLDPDFSNHSYGFRPERSAHQAVLAAQQYIHSG
RQIVVDVDLEQFFDCVEHDVLIARLGRKVKDRDVLRLIRAYLNSGALIEGMVMTSTRG
TPQGGPLSPLLANVVLDEVDKELERRGHCFVRYADDANVYVRSPKAGQRVMALLRRLY
GRLGLRVNESKSAVASAFGRKFLGFSFWQSPKGEVKRRVALKALQVFKHRIRGLTPRS
GGRSLPQVVENLRPYLLGWKAYFGLSQAPGLWKSLDGWIRRRLRAIQLKQWKTGKTTY
RELRKLGANSDLAAAIASDSHRTWHNSAGLIHGVLTVAWFDRLGLPRLY
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