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Information for Pe.ca.I2 intron  (Format of information for each intron) 

[Intron sequence]

[Intron and flanking sequence]

[ORF sequence]

[Secondary structure]

Note: Redundant intron copies found in

CP000142 Pelobacter carbinolicus DSM 2380 (993335-995268)

CP000142 Pelobacter carbinolicus DSM 2380 (1538398-1540331)

CP000142 Pelobacter carbinolicus DSM 2380 (1608371-1610304)

[Intron sequence]

Sequence from Genbank entry.  Intron is identified in red.  The ORF
is identified in blue with start and stop codons underlined.  

5' end

                                                        gtgcgc caggcatggc
1559701 gcgtagcgtc ttgactggcg ctgtttgggc tgctgtggtg gcagtcggat gacttggggg
1559761 tgcaagtccc ctacggaccc tgatgacggg aaccgttagc tgaacagcaa gggtgtccac
1559821 cgcgaggtgg aatctgaagg aagctgtagg caaacttccg gcccgacgaa caggaatcgc
1559881 atacgaggca gtgccatccg ggcgagaagg ccatagtctt caaagcccga tagtcatccg
1559941 ggagggtggt gctgtatatg cggcgggtat gtggaaggaa ggtcacgcgt cttaccctgg
1560001 gagatctgtc aacctgcctc gtgctaccgg catcgcaagg tgtcgggatg ggttggcaga
1560061 agtcagcaga ggccataata gccgggctaa ccactttggc gaagggccga acacgaggcg
1560121 cttttcagga ggcacgaatt tcgatgacga tcgaagaagc agaagccctg gttgagatgc
1560181 cgggggccag gtccgagggt agcgaccgga agtcgcgaga gtacggcatc ggtgcgtcaa
1560241 acgtcacggc atgcagtgaa tcatcctgga cggaagtggc aacgcggctg atggaagaag
1560301 tcgtcagtcg cggcaacatg atggcggctt accagcgagt ggtcaggaac aagggcgcgg
1560361 cgggcatcga tggaatgccg gttggcgacc ttaagaccta cctgcaggag cagtggccgc
1560421 gcatcaaaga agaactgctg accggaacct accagcctca gccggtgcgg aaggtggaaa
1560481 ttcccaagcc cggtggcggg atgcgtatgc tcggcattcc cacggtgctg gatcggctca
1560541 ttcagcaggc gctgcatcag gagctgatgc ggctgtttga accggaattc tccgagcatt
1560601 cctacgggtt tcgtcccgga cggagcgccc accaagccgt tcagtccgcc cgtcggcacg
1560661 tagcctccgg gcggcgctgg gcggtcgata tcgacttgga gaaattcttt gaccgcgtgg
1560721 gccacgacat actcatgtcg cgggtggccc gcaaagtcaa agaccgccgg gtattagggc
1560781 tgattcgccg atatctgacg gtcggtgtgc ttgaaggggg gattatttcg ccaagggtgc
1560841 aggggacgcc gcagggcggc ccgctttcgc ccctgctgtc gaacatcctt ctcgacgagt
1560901 ttgacaagga actggagagg cggggccacg ccttctgccg ctatgccgac gactgcaata
1560961 tttacgtgca tagtcgccgg gcggccgagc gagtcatgac ctcgttgaca cggtttctgg
1561021 aacagcagct caagctcaaa gtcaaccgcg tcaaaagcgc cgttggccgc ccctgggaaa
1561081 gaacctttct gggctacagc atgacctctc acaaaaagcc ccgcctgaaa gtggcgggat
1561141 cttccgtgaa gcggttcaag actagcttgc gagaaatctt tcggcgggga aggggacgcc
1561201 gtctcaagcg ggtcatcgaa gagaccactc cgaagcttcg aggttggatc gcctactttc
1561261 gcctggcgga ggttaagggt atcttcgagg atcttgatgg ttggatcagg cggaaactgc
1561321 gctgcattct gtggcgacag tggaagcgcc cctttacccg agccaggaat ttgatgcggc
1561381 ggggattgcc agagcatcgg gcgtggcgat ccgccacaaa tgagcgaggc ccctggtgga
1561441 actcaggagc ctcgcatatg cacgatgcac ttcggaaatc ctacttcgac agactggggc
1561501 tggtctcgtt agtagattac cgcagacgct ttcagtgcgc tttgtgaacc gccgtgtacg
1561561 gaaccgtacg cacggtggtg tgggaggacg gcgggggtaa ccccgcctcc tacccgat

3' end

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[Intron and flanking sequence]

1559341 tatttttaca agattcccgg tgttgacagc gtcatgccgg agacgatggg tactccgacc
1559401 gtacaggaac agacggtaac ccctgaagaa gcccctgcgg ctccggcgcc ggtcgaagaa
1559461 aaagccgcac ccggaaacta aaataaaaat cacgcaattt catgttgaca gaagccgcat
1559521 aaaaaagtat aaagtttctc gctcaacgcc gaagtggtgg aactggtaga cacgccatct
1559581 tgagggggtg gtggccaatt ggtcgtgcga gttcgagtct cgccttcggc accataaaaa
1559641 gataaaagcc cgtaatcatt tttgattacg ggcttttttt tatggtgcgc caggcatggc
1559701 gcgtagcgtc ttgactggcg ctgtttgggc tgctgtggtg gcagtcggat gacttggggg
1559761 tgcaagtccc ctacggaccc tgatgacggg aaccgttagc tgaacagcaa gggtgtccac
1559821 cgcgaggtgg aatctgaagg aagctgtagg caaacttccg gcccgacgaa caggaatcgc
1559881 atacgaggca gtgccatccg ggcgagaagg ccatagtctt caaagcccga tagtcatccg
1559941 ggagggtggt gctgtatatg cggcgggtat gtggaaggaa ggtcacgcgt cttaccctgg
1560001 gagatctgtc aacctgcctc gtgctaccgg catcgcaagg tgtcgggatg ggttggcaga
1560061 agtcagcaga ggccataata gccgggctaa ccactttggc gaagggccga acacgaggcg
1560121 cttttcagga ggcacgaatt tcgatgacga tcgaagaagc agaagccctg gttgagatgc
1560181 cgggggccag gtccgagggt agcgaccgga agtcgcgaga gtacggcatc ggtgcgtcaa
1560241 acgtcacggc atgcagtgaa tcatcctgga cggaagtggc aacgcggctg atggaagaag
1560301 tcgtcagtcg cggcaacatg atggcggctt accagcgagt ggtcaggaac aagggcgcgg
1560361 cgggcatcga tggaatgccg gttggcgacc ttaagaccta cctgcaggag cagtggccgc
1560421 gcatcaaaga agaactgctg accggaacct accagcctca gccggtgcgg aaggtggaaa
1560481 ttcccaagcc cggtggcggg atgcgtatgc tcggcattcc cacggtgctg gatcggctca
1560541 ttcagcaggc gctgcatcag gagctgatgc ggctgtttga accggaattc tccgagcatt
1560601 cctacgggtt tcgtcccgga cggagcgccc accaagccgt tcagtccgcc cgtcggcacg
1560661 tagcctccgg gcggcgctgg gcggtcgata tcgacttgga gaaattcttt gaccgcgtgg
1560721 gccacgacat actcatgtcg cgggtggccc gcaaagtcaa agaccgccgg gtattagggc
1560781 tgattcgccg atatctgacg gtcggtgtgc ttgaaggggg gattatttcg ccaagggtgc
1560841 aggggacgcc gcagggcggc ccgctttcgc ccctgctgtc gaacatcctt ctcgacgagt
1560901 ttgacaagga actggagagg cggggccacg ccttctgccg ctatgccgac gactgcaata
1560961 tttacgtgca tagtcgccgg gcggccgagc gagtcatgac ctcgttgaca cggtttctgg
1561021 aacagcagct caagctcaaa gtcaaccgcg tcaaaagcgc cgttggccgc ccctgggaaa
1561081 gaacctttct gggctacagc atgacctctc acaaaaagcc ccgcctgaaa gtggcgggat
1561141 cttccgtgaa gcggttcaag actagcttgc gagaaatctt tcggcgggga aggggacgcc
1561201 gtctcaagcg ggtcatcgaa gagaccactc cgaagcttcg aggttggatc gcctactttc
1561261 gcctggcgga ggttaagggt atcttcgagg atcttgatgg ttggatcagg cggaaactgc
1561321 gctgcattct gtggcgacag tggaagcgcc cctttacccg agccaggaat ttgatgcggc
1561381 ggggattgcc agagcatcgg gcgtggcgat ccgccacaaa tgagcgaggc ccctggtgga
1561441 actcaggagc ctcgcatatg cacgatgcac ttcggaaatc ctacttcgac agactggggc
1561501 tggtctcgtt agtagattac cgcagacgct ttcagtgcgc tttgtgaacc gccgtgtacg
1561561 gaaccgtacg cacggtggtg tgggaggacg gcgggggtaa ccccgcctcc tacccgattc
1561621 aaaaaaatga aataaaggtt aagcgttatt tttattttct ggaaataatg gaatcgtttt
1561681 gatataagaa catatattga atttgcaatt ttatttttct ttcaaaatca ccaaatcaca
1561741 taagaaacat taagtcagaa ggtcggatat ttattccgat ttagtttaca gcgtgctgtt
1561801 gtagattagc gcattcgtgc ggccaatgtt tacgacgtgc ccaacagtgt gaacatgcct
1561861 tttggtcgtg tactgatttt cttcctggct tagtaaattc tcctgggtac caatcaggca
1561921 tcgttgtaga cgaacaggac tgcatttcaa tcttgattgc gatgcatccc acgccttttt

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[ORF sequence]

MRRVCGRKVTRLTLGDLSTCLVLPASQGVGMGWQKSAEAIIAGLTTLAKGRTRGAFQE

ARISMTIEEAEALVEMPGARSEGSDRKSREYGIGASNVTACSESSWTEVATRLMEEVV

SRGNMMAAYQRVVRNKGAAGIDGMPVGDLKTYLQEQWPRIKEELLTGTYQPQPVRKVE

IPKPGGGMRMLGIPTVLDRLIQQALHQELMRLFEPEFSEHSYGFRPGRSAHQAVQSAR

RHVASGRRWAVDIDLEKFFDRVGHDILMSRVARKVKDRRVLGLIRRYLTVGVLEGGII

SPRVQGTPQGGPLSPLLSNILLDEFDKELERRGHAFCRYADDCNIYVHSRRAAERVMT

SLTRFLEQQLKLKVNRVKSAVGRPWERTFLGYSMTSHKKPRLKVAGSSVKRFKTSLRE

IFRRGRGRRLKRVIEETTPKLRGWIAYFRLAEVKGIFEDLDGWIRRKLRCILWRQWKR

PFTRARNLMRRGLPEHRAWRSATNERGPWWNSGASHMHDALRKSYFDRLGLVSLVDYR

RRFQCAL

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[Secondary structure]

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| Introduction | Intron secondary structure | Intron ORF structure | Introns listed by organism | Bacterial intron fragments | Alignment of insertion sequence |

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