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Information for Ps.st.I3 intron  (Format of information for each intron

[Intron sequence]

[Intron and flanking sequence]

[ORF sequence]

[Secondary structure]

 

 

[Intron sequence]

 

Sequence from Genbank entry.  Intron is identified in red.  The ORF
is identified in blue with start and stop codons underlined.  

 

5' end

                                                              gtgtgtca

2041 cgaacacagg tcagttgacc tgtgatgctg taccgaagat ggaagtaggc cttccgaagt

2101 cggcttgcag gagcggactt caaaccaccc ggtgctgctg cgcccaaaag gcgtggtggt

2161 gagcgaccga ggaaaagtca cccctgaggg tggcaggtga gtatggagaa gatgagcgaa

2221 agcaaaccgt ccgatgacgc atcgttatgc ccaaggtgct gtcgaaactg aggttgagta

2281 ttggcttcag gacgagtcgg ggcgttacct gcttacggac ccgatggcag ccggtgtata

2341 ggcggcatga tctccatata ggctttggta tggaacgtga gaaccttgct ccagatgcga

2401 aggaaaatga caaatggcca acaccatgag gaagaatacc gatgctggag cgaggggcgg

2461 agcctcccgt agtagtgatg aagcctctgt aatggcggtg gagcgaaggg gcggcgttat

2521 cctgccgacg aatgctgtca acctccgggg atgagcagca tgatatcggc gaaaccttat

2581 ggattagcga agcgcacggt atgggaggca taccagcagg ttaaagctaa ccgtggtgct

2641 gctggcgtcg acgatgaaac cattgccgac ttcgagcagg gcctgtcgaa gaatctttac

2701 aagctgtgga accggatgtc gtcgggatca tacttcccgc cgccggtgaa gcaggtggag

2761 attcccaaag cgtcgggagg catgcgcaag ctgggagtgc ccacggtaat ccacccattt

2821 ttagtactca ccagaagtag aggtcaggcc gcgagggcca acttctgttt gggggtgatg

2881 cctcccaggg ccatatttgg tcgctcatga ttgtatgtcc agatccatcg tgtggcgtgt

2941 tcttgcacct cagcgatgga ctcgaacagg taatgcccca gccagtcata acgtaccgtg

3001 cggttgtagc gttcgacgta ggcattctgc tggggattgc cgggctggat atgttctagg

3061 cggatgccat gcttctctgc ccacagcaca agcttgctgc tgatgtattc cgggccgttg

3121 tcactgcgaa tcgaccgggg tttgccacgc cattcgatca cctgatccag cgcacgcacc

3181 acccgctctg ctggcagtga taggtctata tccatggcca gggcttcgcg gttgaagtcg

3241 tcgatcaggt taaacaggcg gaagctgcga ccgtctgcca gttggtcatg catgaagtcc

3301 atcgaccaac agtgattgat cgcctccggc acagccagag actcgggctt ctcacgcacg

3361 atgcgtttgc gcggcttgat tcgcaggttc agctccagct cgcgataaat ccggtacacc

3421 cgcttgtgat tccagcggtg gcctttcacg ttgcgcaaat acaggaagca caggccgaaa

3481 ccccagttgc gctggttgtg cgtaagccgg atcaggtggt cggcgatctc ggcattttcc

3541 gaggacaacc gtggctggta gcgatagcag gtgacgctaa ccccgaaggc ctggcatgcc

3601 agcttgatgc tagctcgacc agagcgaact gcacgctgcg ccatctctcg ccgccgagat

3661 ggcttcacca cttttttgcc atcgcttcct ggatgatctc ggccttcagg cgctcttcgg

3721 cgtacatctt cttgaggcga cggttctcat cctccagttc gcgtagccgg gccatcaatg

3781 aagcgtccat gccaccgaac ttggcgcgcc acttgtagaa ggttgccgaa ctgatgccat

3841 gctcgcggca aagctcaggg actgggctgc cggcttcggc ctgcttgagg atagcgatga

3901 tctggctgtc cgaaaaacgc gatgtcttca cgcaaaattt ccttgatccg attaggagaa

3961 aattctactt ctgacgagta ctgatttcag ggtggattac cccacggtct ctgaccgtgt

4021 tgcgcaaacc gtagtcaagc ttctcatcga gccagagctg gactcgatct tccatccgga

4081 ctcttatggg tatcggcctg gacggtcggc gaagcaggcc gtggcaatca ctcgtgaacg

4141 ctgctggcga tatgactggg tcgtggagtt tgatatcaag gcggctttcg atcagattga

4201 tcatgggctg ctgatgaaag cggtacgcgc ccacatcaag gaagactgga ttcttctgta

4261 cattgagcgg tggctggttg ctccgttcga aacgaaggac ggcgtttgcg ttccacgcga

4321 ccgcggcact ccgcaaggag gagtagtcag tccaatcctg atgaatctgt tcatgcacta

4381 cgccttcgac atgtggatgc aacgcaccag cgcgaactgt ccgttcgccc ggtatgcaga

4441 cgatgcggtg gttcactgcc gtagtcggaa gcaggcggaa tatatgatgc gaaccatcgc

4501 gtcacggcta gcggactgcg ggctgacgat gcatcctgag aaatcgaaga tcgtgtattg

4561 caaggacagc aaccgtaccg aacagcatct gcatgtgagc ttcaccttcc tgggttttat

4621 gttcaggccg aggaaggcac tcagcaaaga aggcaggctt ttcacgagct tccttccggg

4681 agcgagcgag ggtgccttga agcggatgcg gcaaacggtg cgcaggtggc gactcaatag

4741 tcaaacccac gtgacgctgg ccgatgtggc tcggctatac aatccggtga tacaggggtg

4801 gtggcactac tatggctcgt tttatcggac gtccatgctt ggcatcttcc aacacattga

4861 ccgcgcactt gaacgctggg cccgacgaaa gtacaaggcc cttcacaggc ggaagcggcg

4921 tggtagccga tgggtggaaa agatgcgtat ggcggcaccc cgactgttcc atcactggcg

4981 agtggctggg caacaaggtt ggataacggg agccgtatga cgcgagagtg tcacgtacgg

5041 ttctgcgagc ggctgtgggg gcagttcctg cggtcgactc acc                                      

3' end

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[Intron and flanking sequence]

 

1681 tccattgatg gcgatgctgc gcgtgcacct gatgcaaaac tggttcggct atagcgatac

1741 ggcgatggag gaagcgttgt acgagaccac cattctgcgc cagttcgcag ggttgagcct

1801 ggagcgcatt ccggacgaaa ccaccatcct caacttccgt cgtttgctgg agaagcacga

1861 actggctgct ggaatcctgg ccgtgatcaa cggctacctg gcgaccgtgg cctgtcgctg

1921 cgccagggca ccatcgtcga tgccacgctg atcaatgcgc cgagttcgac gaagaataaa

1981 gatggcaaac gcgacccgga gatgcaccag accaagaagg gaaaccaata ttgtgtgtca

2041 cgaacacagg tcagttgacc tgtgatgctg taccgaagat ggaagtaggc cttccgaagt

2101 cggcttgcag gagcggactt caaaccaccc ggtgctgctg cgcccaaaag gcgtggtggt

2161 gagcgaccga ggaaaagtca cccctgaggg tggcaggtga gtatggagaa gatgagcgaa

2221 agcaaaccgt ccgatgacgc atcgttatgc ccaaggtgct gtcgaaactg aggttgagta

2281 ttggcttcag gacgagtcgg ggcgttacct gcttacggac ccgatggcag ccggtgtata

2341 ggcggcatga tctccatata ggctttggta tggaacgtga gaaccttgct ccagatgcga

2401 aggaaaatga caaatggcca acaccatgag gaagaatacc gatgctggag cgaggggcgg

2461 agcctcccgt agtagtgatg aagcctctgt aatggcggtg gagcgaaggg gcggcgttat

2521 cctgccgacg aatgctgtca acctccgggg atgagcagca tgatatcggc gaaaccttat

2581 ggattagcga agcgcacggt atgggaggca taccagcagg ttaaagctaa ccgtggtgct

2641 gctggcgtcg acgatgaaac cattgccgac ttcgagcagg gcctgtcgaa gaatctttac

2701 aagctgtgga accggatgtc gtcgggatca tacttcccgc cgccggtgaa gcaggtggag

2761 attcccaaag cgtcgggagg catgcgcaag ctgggagtgc ccacggtaat ccacccattt

2821 ttagtactca ccagaagtag aggtcaggcc gcgagggcca acttctgttt gggggtgatg

2881 cctcccaggg ccatatttgg tcgctcatga ttgtatgtcc agatccatcg tgtggcgtgt

2941 tcttgcacct cagcgatgga ctcgaacagg taatgcccca gccagtcata acgtaccgtg

3001 cggttgtagc gttcgacgta ggcattctgc tggggattgc cgggctggat atgttctagg

3061 cggatgccat gcttctctgc ccacagcaca agcttgctgc tgatgtattc cgggccgttg

3121 tcactgcgaa tcgaccgggg tttgccacgc cattcgatca cctgatccag cgcacgcacc

3181 acccgctctg ctggcagtga taggtctata tccatggcca gggcttcgcg gttgaagtcg

3241 tcgatcaggt taaacaggcg gaagctgcga ccgtctgcca gttggtcatg catgaagtcc

3301 atcgaccaac agtgattgat cgcctccggc acagccagag actcgggctt ctcacgcacg

3361 atgcgtttgc gcggcttgat tcgcaggttc agctccagct cgcgataaat ccggtacacc

3421 cgcttgtgat tccagcggtg gcctttcacg ttgcgcaaat acaggaagca caggccgaaa

3481 ccccagttgc gctggttgtg cgtaagccgg atcaggtggt cggcgatctc ggcattttcc

3541 gaggacaacc gtggctggta gcgatagcag gtgacgctaa ccccgaaggc ctggcatgcc

3601 agcttgatgc tagctcgacc agagcgaact gcacgctgcg ccatctctcg ccgccgagat

3661 ggcttcacca cttttttgcc atcgcttcct ggatgatctc ggccttcagg cgctcttcgg

3721 cgtacatctt cttgaggcga cggttctcat cctccagttc gcgtagccgg gccatcaatg

3781 aagcgtccat gccaccgaac ttggcgcgcc acttgtagaa ggttgccgaa ctgatgccat

3841 gctcgcggca aagctcaggg actgggctgc cggcttcggc ctgcttgagg atagcgatga

3901 tctggctgtc cgaaaaacgc gatgtcttca cgcaaaattt ccttgatccg attaggagaa

3961 aattctactt ctgacgagta ctgatttcag ggtggattac cccacggtct ctgaccgtgt

4021 tgcgcaaacc gtagtcaagc ttctcatcga gccagagctg gactcgatct tccatccgga

4081 ctcttatggg tatcggcctg gacggtcggc gaagcaggcc gtggcaatca ctcgtgaacg

4141 ctgctggcga tatgactggg tcgtggagtt tgatatcaag gcggctttcg atcagattga

4201 tcatgggctg ctgatgaaag cggtacgcgc ccacatcaag gaagactgga ttcttctgta

4261 cattgagcgg tggctggttg ctccgttcga aacgaaggac ggcgtttgcg ttccacgcga

4321 ccgcggcact ccgcaaggag gagtagtcag tccaatcctg atgaatctgt tcatgcacta

4381 cgccttcgac atgtggatgc aacgcaccag cgcgaactgt ccgttcgccc ggtatgcaga

4441 cgatgcggtg gttcactgcc gtagtcggaa gcaggcggaa tatatgatgc gaaccatcgc

4501 gtcacggcta gcggactgcg ggctgacgat gcatcctgag aaatcgaaga tcgtgtattg

4561 caaggacagc aaccgtaccg aacagcatct gcatgtgagc ttcaccttcc tgggttttat

4621 gttcaggccg aggaaggcac tcagcaaaga aggcaggctt ttcacgagct tccttccggg

4681 agcgagcgag ggtgccttga agcggatgcg gcaaacggtg cgcaggtggc gactcaatag

4741 tcaaacccac gtgacgctgg ccgatgtggc tcggctatac aatccggtga tacaggggtg

4801 gtggcactac tatggctcgt tttatcggac gtccatgctt ggcatcttcc aacacattga

4861 ccgcgcactt gaacgctggg cccgacgaaa gtacaaggcc cttcacaggc ggaagcggcg

4921 tggtagccga tgggtggaaa agatgcgtat ggcggcaccc cgactgttcc atcactggcg

4981 agtggctggg caacaaggtt ggataacggg agccgtatga cgcgagagtg tcacgtacgg

5041 ttctgcgagc ggctgtgggg gcagttcctg cggtcgactc accacttcgg tatgaaggcg

5101 catatcggcg tggacgacac gtctggcctg gtgcacagcg tagtgggtac ggcggccaac

5161 gttgcggacg ttactcaggt cgacaagttg ctgcatggcg acgagaacgt agtttgtacg

5221 gacgcgggct acattggcgt tgagaaacgt ccggagcatg ctgatcggaa ggttatctgg

5281 caggtggcgg cacgacgtag cacctacaag aagctcgata aacgcagtgc gctatacaaa

5341 gccaagcgca agatcgagaa agccaaggct caggtgcgcg ccaaggtcga gcacccgttc

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[ORF sequence]

 

MDYPTVSDRVAQTVVKLLIEPELDSIFHPDSYGYRPGRSAKQAVAITRERCWRYDWVV

EFDIKAAFDQIDHGLLMKAVRAHIKEDWILLYIERWLVAPFETKDGVCVPRDRGTPQG

GVVSPILMNLFMHYAFDMWMQRTSANCPFARYADDAVVHCRSRKQAEYMMRTIASRLA

DCGLTMHPEKSKIVYCKDSNRTEQHLHVSFTFLGFMFRPRKALSKEGRLFTSFLPGAS

EGALKRMRQTVRRWRLNSQTHVTLADVARLYNPVIQGWWHYYGSFYRTSMLGIFQHID

RALERWARRKYKALHRRKRRGSRWVEKMRMAAPRLFHHWRVAGQQGWITGAV

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[Secondary structure]

 

                                                                            

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