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Information of R.e.I1 intron (Format of information for each intron)
[Intron and flanking sequence]
Note: Redundant intron copies found in
AY305378 Ralstonia eutropha H16 megaplasmid pHG1 (23468-25304)
Sequence
from Genbank entry. Intron is identified in red.
The ORF
is identified in blue with start and stop codons
underlined.
5' end
1 gtgtgtcacg aacgcaggct taagtctgcg atgctgtact gaagatggga gaaggcctcc
61 cggagtcggc ttgcaggagc agattccaaa ccacccggtg ctgctgcgtt caaaaggcgt
121 ggtggtgagc gaccggggac gtcatccgca gaggatggcg ggtacgtgct gagaaagcaa
181 accgtccgat gacgcatcgt tattgccagg gcgctgtcga aactgaggcc ggccattcgc
241 ttcaggacaa accgggacga cacctgttta cgggtccggt ggcagccggt gtataggcgg
301 catgatctca gcgcaggctt tggtacggaa cgtgagaatc ttgctccaga tgtgaaggga
361 aatgacaaat ggcagacacc atgaggaaga ataccgatgc tggagtgagg ggcggagccg
421 cccgtagtag cgttgaagtt cctgtaatgg gaatggagcg aaggggcggc gttatcctgc
481 tgatgaacgc ggtcaacctg cggggatgag cggcgtgaaa tcggcgaagc cgtacaacat
541 tgcgaacggc acggtatggg aggcatacca gcaggtcaag gccaaccgtg gcgctgccgg
601 gatcgacgat gaagccatcg ccgagttcga gcagaacctg tcgaagaatc tgtacaagct
661 gtggaaccgg atgccatcgg ggtcgtatct cccgccaccg gtcaagcaag tggagattcc
721 caaggcgtcg ggaggtacga gaaagctggg ggtgcccacg gtcgcagacc gtgttgcgca
781 aaccgtggtc aaactggtca ttgagccggg tctcgacgcg atcttccatc cggactccta
841 cgggtaccgg ccggggcggt ctgcgaagca ggcggtagcg atcactcgtg aacgttgctg
901 gcgatatgac tgggtggtag aatttgacat caaggcagcc tttgatcaga tcgatcatgg
961 actgctgatg aaagcggtgc gcacccacat cagggaagac tggatactgc tatgcatcga
1021 acggtggcgg gttgcaccgt tcgagacagc ggacggggtg cgtgtgcccc gcacgcgggg
1081 aacaccccag ggcggtgtga gcagtccgat cctgatgaac ctgttcacgc attacacatt
1141 cgaccgatgg atgcagcgca ccagcccaaa ctgtccgttt gcccgctacg cggatgatgc
1201 ggtggttcac tgcaatagcc gcaggcaggc ggaatacgtg atgcggtcca ttgcagcacg
1261 gctggcagct tgtgggctga cgatgcatcc ggagaaatcg aagatcgtgt actgcagaga
1321 cagcgcaacc gcagcgaacg ccatctgcac gcgagcttta cgtttctcgg ttttacgttt
1381 aggccgagga aagcgctcag cccgcaaggg gggcctttta ccagcttcct gccgggagcc
1441 agcgagagtg ccttgaagcg gatgcggcag gcagtgcggg gttggcgact caatcgccag
1501 acccatgtaa cacttgccga tgtggcgaga ctgtacaacc cagtgataca ggggtggtgg
1561 aattactatg gcgcgttcta caagactgcg atgcttcaca tcttccagca catcgactgc
1621 gctcttgagc gttgggcccg acggaagtac aagggtctgc acaggcgcaa gcgacgaagt
1681 gccgaatggc tggacaggat gcgccgtaac aacccgatgc tgttcgctca ctggcgtgtg
1741 gttacgcaac cggctggata acgggagccc tatgacgcga gagtgtcacg tacggttctg
1801 cgagaggctc ggggggcggt tccccgggtc tacttac
3' end
[Intron and flanking sequence]
1801 acgagcgcga agagatgaac atgaagcaga tgacgttcgc ggcgggtgca gatcaagagg
1861 cgggattcga gcaataccgt aagccaacgc gacgcgagac atttctggcg atgatggaga
1921 cgatcgtgcc gtgggcggca ttgtgcgccg tgatcgagcc gtactatccg aaggcgggca
1981 acggccggcc gcccattggc ctggaacgga tgctgcgcat ccactttttg cagcactggt
2041 tcaacctggc ggatctggcc tgcgaagagg cgctgtatga cagcgccagc ctgcgccgct
2101 tcgttgggat tgacctgggt cgtgaaccgg tgccggacgc cagcacgctg ctgaagtttc
2161 gccggttact ggagaagcac cagcttgccg agcggctgtt cgctgaggtt ggccgggtcc
2221 tccaaaccaa cggtgtaaag ctgaagactg gcaccattgt ggatgccacc atcatcggcg
2281 caccgagttc gaggaagaat gaagagaagt cgcgcgagcc ggagatgcac cagactcgca
2341 aagggaagca atggtgtgtg tcacgaacgc aggcttaagt ctgcgatgct gtactgaaga
2401 tgggagaagg cctcccggag tcggcttgca ggagcagatt ccaaaccacc cggtgctgct
2461 gcgttcaaaa ggcgtggtgg tgagcgaccg gggacgtcat ccgcagagga tggcgggtac
2521 gtgctgagaa agcaaaccgt ccgatgacgc atcgttattg ccagggcgct gtcgaaactg
2581 aggccggcca ttcgcttcag gacaaaccgg gacgacacct gtttacgggt ccggtggcag
2641 ccggtgtata ggcggcatga tctcagcgca ggctttggta cggaacgtga gaatcttgct
2701 ccagatgtga agggaaatga caaatggcag acaccatgag gaagaatacc gatgctggag
2761 tgaggggcgg agccgcccgt agtagcgttg aagttcctgt aatgggaatg gagcgaaggg
2821 gcggcgttat cctgctgatg aacgcggtca acctgcgggg atgagcggcg tgaaatcggc
2881 gaagccgtac aacattgcga acggcacggt atgggaggca taccagcagg tcaaggccaa
2941 ccgtggcgct gccgggatcg acgatgaagc catcgccgag ttcgagcaga acctgtcgaa
3001 gaatctgtac aagctgtgga accggatgcc atcggggtcg tatctcccgc caccggtcaa
3061 gcaagtggag attcccaagg cgtcgggagg tacgagaaag ctgggggtgc ccacggtcgc
3121 agaccgtgtt gcgcaaaccg tggtcaaact ggtcattgag ccgggtctcg acgcgatctt
3181 ccatccggac tcctacgggt accggccggg gcggtctgcg aagcaggcgg tagcgatcac
3241 tcgtgaacgt tgctggcgat atgactgggt ggtagaattt gacatcaagg cagcctttga
3301 tcagatcgat catggactgc tgatgaaagc ggtgcgcacc cacatcaggg aagactggat
3361 actgctatgc atcgaacggt ggcgggttgc accgttcgag acagcggacg gggtgcgtgt
3421 gccccgcacg cggggaacac cccagggcgg tgtgagcagt ccgatcctga tgaacctgtt
3481 cacgcattac acattcgacc gatggatgca gcgcaccagc ccaaactgtc cgtttgcccg
3541 ctacgcggat gatgcggtgg ttcactgcaa tagccgcagg caggcggaat acgtgatgcg
3601 gtccattgca gcacggctgg cagcttgtgg gctgacgatg catccggaga aatcgaagat
3661 cgtgtactgc agagacagcg caaccgcagc gaacgccatc tgcacgcgag ctttacgttt
3721 ctcggtttta cgtttaggcc gaggaaagcg ctcagcccgc aaggggggcc ttttaccagc
3781 ttcctgccgg gagccagcga gagtgccttg aagcggatgc ggcaggcagt gcggggttgg
3841 cgactcaatc gccagaccca tgtaacactt gccgatgtgg cgagactgta caacccagtg
3901 atacaggggt ggtggaatta ctatggcgcg ttctacaaga ctgcgatgct tcacatcttc
3961 cagcacatcg actgcgctct tgagcgttgg gcccgacgga agtacaaggg tctgcacagg
4021 cgcaagcgac gaagtgccga atggctggac aggatgcgcc gtaacaaccc gatgctgttc
4081 gctcactggc gtgtggttac gcaaccggct ggataacggg agccctatga cgcgagagtg
4141 tcacgtacgg ttctgcgaga ggctcggggg gcggttcccc gggtctactt accacttcgg
4201 catgaagctc cacattggcg tggacagtca gattgggttg gcccattcgg cagtcgtaac
4261 gccagccaat gttcatgaca agcatgcagt gcaccagcta ttgcatgggc aggagcagcg
4321 agtctatggc gatagcgcct acgccagtca gcaggcgctg atcgcgtcca aggcgccccg
4381 cgccaaggac ttcaccaatc agcgtacgcg caagagcggg cagattgacg aggtgcaacg
4441 tgggaagaac cgcaacaaat cgaagatccg tgctcgggtc gagcatgtgt ttgccgtagt
4501 caaacgcctg tggggcttca ctaaagtacg ctaccgtggc ttgaagaaga atgccggccg
4561 ggccttcacg gccctggcgc tggccaatct gtacctcagc cgagggcatt tgatgggagc
4621 agtccgtccg taaagggcga atgtggggca agtgctccgc caacacgccc catttgggat
4681 gcggcaggaa aaattcgcgt catcagagcc gagtttttcg accgcacacg ttcttatcag
MSGVKSAKPYNIANGTVWEAYQQVKANRGAAGIDDEAIAEFEQNLSKNLYKLWNRMPS
GSYLPPPVKQVEIPKASGGTRKLGVPTVADRVAQTVVKLVIEPGLDAIFHPDSYGYRP
GRSAKQAVAITRERCWRYDWVVEFDIKAAFDQIDHGLLMKAVRTHIREDWILLCIERW
RVAPFETADGVRVPRTRGTPQGGVSSPILMNLFTHYTFDRWMQRTSPNCPFARYADDA
VVHCNSRRQAEYVMRSIAARLAACGLTMHPEKSKIVYCRDSXRNRSERHLHASFTFLG
FTFRPRKALSPQGGPFTSFLPGASESALKRMRQAVRGWRLNRQTHVTLADVARLYNPV
IQGWWNYYGAFYKTAMLHIFQHIDCALERWARRKYKGLHRRKRRSAEWLDRMRRNNPM
LFAHWRVVTQPAG
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