S.f.I1

Note: Redundant intron copies found in

AF200692 Shigella flexneri (21025-23296)

AE015311 Shigella flexneri (585-2272)

AE016988 Shigella flexneri (150712-152981)

[Intron sequence]

Sequence from Genbank entry (intron is on the antisense strand).

The boundaries of the intron are marked as red and ORF is marked

as blue, with start and stop codons underlined.

Intron on the antisense strand

3' end

gtaag agtaagaggc agggcgtagt

541 cggactattt ccctgcctct cctccccgaa ccggacgtgc acctttcagc gcatccggct

601 ctccatttaa atgctggcga acgccattgc cacttctgta aagcgcgatg tatacgtgtt

661 tctggtctcc gtcctcagat agggattacc ttcgggtagc cgccagcgga acagcttctt

721 gccttgcccc accaaccggt acagtatttc gccgctgagc ttgccgtgat tggttttacc

781 aaataaaacc cacgttttgc tctgacccgg tttcggtgat ttacaccacc acctcatcag

841 ggaagcgata cctgttacgg tatttgcggg ccagccagtg agccagcttc cagaacacga

901 cacggtcgat ataactgaag actttggcct taaaatcaac gaactgatag aacatggccc

961 agcctttcag ttttcggttg agttgttcag ccatatcgac tttgctttca ctgtagttgc

1021 ctgataacag tgctgtcagc gatgcggcga agtttctggc tttctcctgc gggatcgttg

1081 agaccactcg catctcgcca taacgactgc gtttgcgaat gatcctgtgc cccagaaaga

1141 taaagccgtc attaacatgg gtgattttag tcttatccat gttcagcctg agtttcagac

1201 tgccttcgag cacaccccga cactcctccc tgatggcttc cgcctgtgct ttggtgcctt

1261 tgacgatgag gacaaaatca tcggcatagc ggcagtacgc caccgcgggt ttccactgcc

1321 agttttctct gaccgccgta cttcggcccc gttggatact gttattccag taccaccgat

1381 cttttctggc tttcccgctc aggtagcgct catgcaggta ttgatcgaac tcattcagca

1441 tgatgttcga taatagcggc gatataacac cgccctgtgg cacaccttca ctggccgccc

1501 gaaagagacc gacatcgata tgtcccgcct tgatggtttt ccacagcaga gtcatgaaac

1561 gtgcgtcact gatcctgcgg cgtacagcct tcatcagcag tcgatgatgt acggtgtcga

1621 agtaactgga caggtcgcct tcaatcaccc agcgtccccg ggtttcacca cagtctgtga

1681 gctgtaattt caccgtgcgg atcgcgtggt ggacactgcg ctcaggccgg aagccatatg

1741 agagcgtatg aaaatcactn tcccatatcg gctccatcgc catcagcatg gcccgctgaa

1801 caatacgatc ccgcaacgcg gggataccca gtggtcgcag tttgccgttg cttttaggga

1861 tgtaaacccg tctggcgggc aagggctggt agtggcntga gagtaattca tccctgagga

1921 tttgcagctc aacagccagt ctggcctgta gcattgtttt gttcacgcca tcaacgccgg

1981 gggtatgggc cccctttgat gaaagcgtga tccgcgccgc ttcagccagc cattctggtt

2041 gtgttatcag acgcagcagc cgttgaatcc gtagggacgg atcggtggct gcccatgtgg

2101 caagcttgcg ttgcatttcg ctgattatca aaggtcttca cctcgttagg tcagttaatt

2161 cacgtcgcaa acacattcaa actgcttccc ttcgccatgt aatgggcttt ccccatcgcg

2221 gactactacg gaagctccgc cagccagcgc gtcatcggag ccatgccccc ttaacatccg

2281 tcgctgacct tccccggttt acctgcctgg actcaggcat actgaggagg ctgcccgtcg

2341 cactctttat ccttgcttgc cgcaagttgg cagaagtcag caacgcaagt gtgatagacg

2401 ctgctgcccc ggtgtttcgc atacatgtca aaacaccttc gaccggcagt gcttacgtat

2461 cactgccagt tcctcctgca cggcctgtca gatcacgtag gccgtggtga cgttttcaac

2521 ccacagaggc ggattaacgg gttcatgttc ttcagccttt cagtacttaa ccttgaggat

2581 catctcggct tagtgatctc gcctcaatcc ccgttgtcag cgggttacat caccctgcgg

2641 gcatgccgca ggtcactgcc gctcaggttc tccaccgtca cacccggtgg gattgttggg

2701 tttctcatcg tgagttaccg gttcaatatt ccagacagac tcgcggttca tttaagcatc

2761 catgcccgcc ctgaactccg ggcacac

5' end

Intron on the sense strand

5' end

1 gtgtgcccgg agttcagggc gggcatggat gcttaaatga accgcgagtc tgtctggaat

61 attgaaccgg taactcacga tgagaaaccc aacaatccca ccgggtgtga cggtggagaa

121 cctgagcggc agtgacctgc ggcatgcccg cagggtgatg taacccgctg acaacgggga

181 ttgaggcgag atcactaagc cgagatgatc ctcaaggtta agtactgaaa ggctgaagaa

241 catgaacccg ttaatccgcc tctgtgggtt gaaaacgtca ccacggccta cgtgatctga

301 caggccgtgc aggaggaact ggcagtgata cgtaagcact gccggtcgaa ggtgttttga

361 catgtatgcg aaacaccggg gcagcagcgt ctatcacact tgcgttgctg acttctgcca

421 acttgcggca agcaaggata aagagtgcga cgggcagcct cctcagtatg cctgagtcca

481 ggcaggtaaa ccggggaagg tcagcgacgg atgttaaggg ggcatggctc cgatgacgcg

541 ctggctggcg gagcttccgt agtagtccgc gatggggaaa gcccattaca tggcgaaggg

601 aagcagtttg aatgtgtttg cgacgtgaat taactgacct aacgaggtga agacctttga

661 taatcagcga aatgcaacgc aagcttgcca catgggcagc caccgatccg tccctacgga

721 ttcaacggct gctgcgtctg ataacacaac cagaatggct ggctgaagcg gcgcggatca

781 cgctttcatc aaagggggcc catacccccg gcgttgatgg cgtgaacaaa acaatgctac

841 aggccagact ggctgttgag ctgcaaatcc tcagggatga attactctca ngccactacc

901 agcccttgcc cgccagacgg gtttacatcc ctaaaagcaa cggcaaactg cgaccactgg

961 gtatccccgc gttgcgggat cgtattgttc agcgggccat gctgatggcg atggagccga

1021 tatggganag tgattttcat acgctctcat atggcttccg gcctgagcgc agtgtccacc

1081 acgcgatccg cacggtgaaa ttacagctca cagactgtgg tgaaacccgg ggacgctggg

1141 tgattgaagg cgacctgtcc agttacttcg acaccgtaca tcatcgactg ctgatgaagg

1201 ctgtacgccg caggatcagt gacgcacgtt tcatgactct gctgtggaaa accatcaagg

1261 cgggacatat cgatgtcggt ctctttcggg cggccagtga aggtgtgcca cagggcggtg

1321 ttatatcgcc gctattatcg aacatcatgc tgaatgagtt cgatcaatac ctgcatgagc

1381 gctacctgag cgggaaagcc agaaaagatc ggtggtactg gaataacagt atccaacggg

1441 gccgaagtac ggcggtcaga gaaaactggc agtggaaacc cgcggtggcg tactgccgct

1501 atgccgatga ttttgtcctc atcgtcaaag gcaccaaagc acaggcggaa gccatcaggg

1561 aggagtgtcg gggtgtgctc gaaggcagtc tgaaactcag gctgaacatg gataagacta

1621 aaatcaccca tgttaatgac ggctttatct ttctggggca caggatcatt cgcaaacgca

1681 gtcgttatgg cgagatgcga gtggtctcaa cgatcccgca ggagaaagcc agaaacttcg

1741 ccgcatcgct gacagcactg ttatcaggca actacagtga aagcaaagtc gatatggctg

1801 aacaactcaa ccgaaaactg aaaggctggg ccatgttcta tcagttcgtt gattttaagg

1861 ccaaagtctt cagttatatc gaccgtgtcg tgttctggaa gctggctcac tggctggccc

1921 gcaaataccg taacaggtat cgcttccctg atgaggtggt ggtgtaaatc accgaaaccg

1981 ggtcagagca aaacgtgggt tttatttggt aaaaccaatc acggcaagct cagcggcgaa

2041 atactgtacc ggttggtggg gcaaggcaag aagctgttcc gctggcggct acccgaaggt

2101 aatccctatc tgaggacgga gaccagaaac acgtatacat cgcgctttac agaagtggca

2161 atggcgttcg ccagcattta aatggagagc cggatgcgct gaaaggtgca cgtccggttc

2221 ggggaggaga ggcagggaaa tagtccgact acgccctgcc tcttactctt ac

3' end

[top]

[Intron and flanking sequence]

121 ttccagcaat cgtcgattgt tataccagtc cacccacgtg agtgtggcca gctccacttc

181 tgtccggttt ttccagctct tacggtgtat tacctccgct ttgtaaaggc ccttgatgat

241 ctctgccatc gcgttgtcat acgagtcacc agtactccct gttgatgcca gcagttttgc

301 ttcttttagt cgcgccttat aggccagtga cacatactga gagcctttat cgctgtgatg

361 gatggtgcca gacggacgac gggcccacaa cgcctgctcc agtgcatcca gcacgaatgt

421 cgtttccata gacgatgaga ctcgtcaccn cacgatgtat ccggcaaaca catcaatgat

481 gaacgccaca tanacgaagc cctgccatgt gctgagtaag agtaagaggc agggcgtagt