[Back to introns by organism]  [Back to home page]

Information for Sr.t.I1 intron  (Format of information for each intron)

[Intron sequence]

[Intron and flanking sequence]

[ORF sequence]

[Secondary structure]

[Intron sequence]

Sequence from Genbank entry.  Intron is identified in red.  The ORF
is identified in blue with start and stop codons underlined.  

5' end

                                    g tgtgctgcag agcagcggaa ggagttcagt
  61 atgagctaac cccgtgacgt aaagctgcgt aaatgatggg ggacggcccc ccgggatcgg
 121 ctttcaggag cgggtctcaa accagtccga gctgctgcgg taaagagccg tggtggtgag
 181 cgtcggatga aaagttcgga cgagatccga gcaggtgagt gtccgaaaga cgaacgaaag
 241 tgaaccctcc gaagacgcgc cgttatgaat aaagcgtcgt cgaaaccagg accgtttcgt
 301 catcctggga caagtccgcc gggtgcctga tgactgggcg ggcggcgacc ggcgtagagg
 361 gggcgtgagt cggatacagg cttttacgcg gaactgcagg aaccaggctc ctgatgccaa
 421 gggagaagcc caagcggaga aaccgcaagg cgagagtacc gatgcaggag actggggcgg
 481 accgatccgt atgagcgtcg agggctctgt aatggggccg gagcaaaggg atcggatcag
 541 gtggtcgtat tgtttggaac aactggaaac aggatgactt cgataggtac gacagacaag
 601 ccgtttcgaa ttgagaaacg gcaggtgcac gaagcttatn aagcggtcaa agccaaccgt
 661 ggtgcagccg gggtggacgg tgagaccttg gagatgtttg agaaagacct tgcgagaaat
 721 ctctacaaga tctggaatcg gatgtcgtcc gggacctact ttccgtcgcc ggtgcgtgcc
 781 gtctccattc cgaagaagac tggaggggaa agggttttgg gtgtgccaac ggtcagcgat
 841 cgcatcgcgc agatggtggt caagcacatg attgagccgg atttggactc gctctttctt
 901 tcggactcct acgggtacag gccgggaaaa tcggccttgg atgccgttgg ggtgacgcgt
 961 cagcggtgct ggaagtacga ttgggttctg gaattcgaca tcaaagggct gtttgacaat
1021 cttccgcatg atctcttgct gaaggcggtc agaaaagatg tcaaatgcaa ctgggctctg
1081 ctctacatcg aaagatggct ggccgcgcct atggaaaaga atggagaggt cattgagcga
1141 acgcgcggta ccccgcaagg gggcgtggtc agcccaatcc tctcgaatct cttcctgcat
1201 tacgcgtttg acgtctggat gacccggaca catccggatc ttccatggtg tcggtatgcg
1261 gacgatggtc tggtgcattg ccggaccgag caagaagcag aggccctcat ggccgagctt
1321 caagcgcggc tggcagaatg cggacttcag atgcatccga ctaagaccca gatcgtctac
1381 tgcaaagata atcggcgccg ggaaatgtat ccgactgtca aatttgactt ccttggatac
1441 cagttcaggc cgcgacaggt ggcgacgtca cagcggaatg agttcttctg tggctatacc
1501 ccagcggtca gtccggcggc gctaaaatcg atgcgggcca cgatcaagag cttgaacata
1561 ccgcggcaaa cgccggggac gctggctgaa atcgccaaac agatcaatcc gctcctgcag
1621 ggatggattg cctattatgg gcggttcagt cgttcggccc tgttctctct ggctgactac
1681 gtcaatcgga agctcaaggc ttggatcatg cgaaagtaca agcgctttcg gttccacaag
1741 actcgggcgt cgcagttcct gcggcaactt gcccgagata ggcgggacct cttcgtacac
1801 tggcaggcgt tcggaacgaa cacgtttacc tgatgggagc ggtgtgaatc gagaggttca
1861 cgcaccgttc tgcgagaggc cggccggtga aactcctccg gcctactcac c

3' end

[top]

[Intron and flanking sequence]

   1 tgatcaggtg gccgtattga tcgacgagag tgtgctgcag agcagcggaa ggagttcagt
  61 atgagctaac cccgtgacgt aaagctgcgt aaatgatggg ggacggcccc ccgggatcgg
 121 ctttcaggag cgggtctcaa accagtccga gctgctgcgg taaagagccg tggtggtgag
 181 cgtcggatga aaagttcgga cgagatccga gcaggtgagt gtccgaaaga cgaacgaaag
 241 tgaaccctcc gaagacgcgc cgttatgaat aaagcgtcgt cgaaaccagg accgtttcgt
 301 catcctggga caagtccgcc gggtgcctga tgactgggcg ggcggcgacc ggcgtagagg
 361 gggcgtgagt cggatacagg cttttacgcg gaactgcagg aaccaggctc ctgatgccaa
 421 gggagaagcc caagcggaga aaccgcaagg cgagagtacc gatgcaggag actggggcgg
 481 accgatccgt atgagcgtcg agggctctgt aatggggccg gagcaaaggg atcggatcag
 541 gtggtcgtat tgtttggaac aactggaaac aggatgactt cgataggtac gacagacaag
 601 ccgtttcgaa ttgagaaacg gcaggtgcac gaagcttatn aagcggtcaa agccaaccgt
 661 ggtgcagccg gggtggacgg tgagaccttg gagatgtttg agaaagacct tgcgagaaat
 721 ctctacaaga tctggaatcg gatgtcgtcc gggacctact ttccgtcgcc ggtgcgtgcc
 781 gtctccattc cgaagaagac tggaggggaa agggttttgg gtgtgccaac ggtcagcgat
 841 cgcatcgcgc agatggtggt caagcacatg attgagccgg atttggactc gctctttctt
 901 tcggactcct acgggtacag gccgggaaaa tcggccttgg atgccgttgg ggtgacgcgt
 961 cagcggtgct ggaagtacga ttgggttctg gaattcgaca tcaaagggct gtttgacaat
1021 cttccgcatg atctcttgct gaaggcggtc agaaaagatg tcaaatgcaa ctgggctctg
1081 ctctacatcg aaagatggct ggccgcgcct atggaaaaga atggagaggt cattgagcga
1141 acgcgcggta ccccgcaagg gggcgtggtc agcccaatcc tctcgaatct cttcctgcat
1201 tacgcgtttg acgtctggat gacccggaca catccggatc ttccatggtg tcggtatgcg
1261 gacgatggtc tggtgcattg ccggaccgag caagaagcag aggccctcat ggccgagctt
1321 caagcgcggc tggcagaatg cggacttcag atgcatccga ctaagaccca gatcgtctac
1381 tgcaaagata atcggcgccg ggaaatgtat ccgactgtca aatttgactt ccttggatac
1441 cagttcaggc cgcgacaggt ggcgacgtca cagcggaatg agttcttctg tggctatacc
1501 ccagcggtca gtccggcggc gctaaaatcg atgcgggcca cgatcaagag cttgaacata
1561 ccgcggcaaa cgccggggac gctggctgaa atcgccaaac agatcaatcc gctcctgcag
1621 ggatggattg cctattatgg gcggttcagt cgttcggccc tgttctctct ggctgactac
1681 gtcaatcgga agctcaaggc ttggatcatg cgaaagtaca agcgctttcg gttccacaag
1741 actcgggcgt cgcagttcct gcggcaactt gcccgagata ggcgggacct cttcgtacac
1801 tggcaggcgt tcggaacgaa cacgtttacc tgatgggagc ggtgtgaatc gagaggttca
1861 cgcaccgttc tgcgagaggc cggccggtga aactcctccg gcctactcac cctggccttt
1921 ccacgaagat cgcgtttgcg cggccgcgcc caacggggcg aacgttgccg gttgtgccgc
1981 atggacactg gaaaaccacg accttcacag atgctcttag gctttccggc atgatttccg
2041 gcatgaccgc gccaatggtg ctcgacgggg cgatgaacgg cgtggcattc cgggcctatg
2101 tcgagcaggt tctcgtaccg accctcagtt caggcgatat cgtcatcatg gacatctgcc
2161 ggctcataaa gccgacggcg ttcggcagcc attgagggcc aggctgcgag ctgctctatc
2221 tcccacccta cagccccgac ttcaatcttc aatcccatcg aaaacgcctt ctcaaaactc
2281 aaggcgggcc aaggccgagc gttccgtaga cgccttgtgg aacactgtcg gcgagatcgt
2341 caaaatcttc gagccacagg aatgcgccaa ctacttcgcg gcagccggat atgacctcga
2401 ttaaaacgga cgtgtctagc gtgagca

[top]

[ORF sequence]

MTSIGTTDKPFRIEKRQVHEAYXAVKANRGAAGVDGETLEMFEKDLARNLYKIWNRMS

SGTYFPSPVRAVSIPKKTGGERVLGVPTVSDRIAQMVVKHMIEPDLDSLFLSDSYGYR

PGKSALDAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIER

WLAAPMEKNGEVIERTRGTPQGGVVSPILSNLFLHYAFDVWMTRTHPDLPWCRYADDG

LVHCRTEQEAEALMAELQARLAECGLQMHPTKTQIVYCKDNRRREMYPTVKFDFLGYQ

FRPRQVATSQRNEFFCGYTPAVSPAALKSMRATIKSLNIPRQTPGTLAEIAKQINPLL

QGWIAYYGRFSRSALFSLADYVNRKLKAWIMRKYKRFRFHKTRASQFLRQLARDRRDL

FVHWQAFGTNTFT

[top]

[Secondary structure]

                                                                                                   [top]

| Introduction | Intron secondary structure | Intron ORF structure | Introns listed by organism | Bacterial intron fragments | Alignment of insertion sequence |

| Phylogenetic tree of intron ORFs | How to find group II intron | Site map | Contact us |