Sy.wo.I2-1

Note: Redundant intron copies found in

CP000448 Syntrophomonas wolfei subsp. wolfei str. Goettingen (1176826-1178727)

CP000448 Syntrophomonas wolfei subsp. wolfei str. Goettingen (1443066-1444967)

[Intron sequence]

Sequence from Genbank entry (intron is on the antisense strand).

The boundaries of the intron are marked as red and ORF is marked

as blue, with start and stop codons underlined.

Intron on antisense strand

3' end

atcgggt aggaggctac ccattaattg agtagccgac ctcccacacc accgtacgta

3841 ccgttcggta tacggcggtt ccaaagttta cacactactt cgcagagtag cattccatca

3901 aactgaggta tccggcacgt ttgaacctct cgttggatag ggctattaat aagattggac

3961 tatgggcggt acgccagtag ccttttcttg tattcgccca catccatgcc cgttcttcct

4021 taattcccag gtgtttgaga ttttcagaac gtgtacggac tttcttccat cgtttccatg

4081 taaccatccg aatgcgactt cttatccact catccaatcc ctgtatgagg ttctttgcat

4141 ctaccagttt gaagtaattc atccatcctc gaaccacttg gttcaatcgg attttccttg

4201 actcaatccc catcccgtta ctacgtcctg tgacttcccg gattttttcc ttaaattttt

4261 ggacgctctt gggatgtatc ctgagcctcc cttctccttt atggatgtag aaaccataac

4321 ccagaaattt gaccttgttc acgtgtgcta cctgtgtttt atcccgattc accctcaaga

4381 ataatttctc ttcgatgtat gggaggatgt ggtttagcgt acgattggcc gctttcttgc

4441 ttttgcagaa aatcatcata tcatctgcat agcgtacaaa gcggtgtccg cgcctttcca

4501 gttcatggtc acattcattc agcatgatgt ttcccagcag tggactcagg ggtccgcctt

4561 gcggcactcc ttcggggctg tcttcaaaca ttccgcctac cataactccc gctcgcagga

4621 atttgtgaat cagcgcaatg actcgtccat cttttatcgt ttccgatagt atctgaatga

4681 gtttgctctg gttgaccgtg tcaaagtact tttccaaatc catatcgact acgtatctgt

4741 agccatctgt aatgttggtc tggcatcttt taagtgcatc atgtgcactc cttttcggtc

4801 ggaatccaaa gctattgttt gaaaactgtt tctcaaagat taggctcaag acttggcaaa

4861 tcgcttgttg gattagcctg tccacgacag ttggtatccc cagctttctg gtcttcccgt

4921 tctctttggg tatttctacc ctgcgtacgg gtttaggacg gtatttgccg tcccggaggg

4981 attgcacaag ttcgttcttg ttttctttca ggaagggtag aagttcatct acctgcattc

5041 cgtcaattcc acccgcacct ttgtttctct ttacctgctt gtaggcacga ttcagattat

5101 ctctgcttag aatttgctcc agcaatcctt ccgtctgctc gtttgtgttg gtgctgtcgg

5161 tttcagtcat cttcggtgac gcgcacgctt ctgcatactc tctctgttcc gcagataccc

5221 tttgcagata gccttcttct cgaagttgtc tgtgttttaa gttgtcactt tcagtaactt

5281 tcgttgaccc acacctccta tggttcagcc cttccttcgg catcgcgctg cctccgtact

5341 atggcctctg ctgacttctc acgataaatc ttgtttcaac cgggcttctt actctgtttc

5401 cacccgtccg tgagacctcc ccgggtaaga acgcagtctt tccttccatc tatctgccac

5461 atctacaccg taagcttccg gatagtttcg ggcttcagtt tgttgcgcaa ccttacccag

5521 cttacgatgc ctgatgtgat ttctgttcgt cagaccagaa gtttgcctcc ggcttccttc

5581 ggattccacc tcacgatgga cacccttgcc cttggctatg tgcttggcac tatcaacccg

5641 cactagggac tttcacccat tagactgcgc ccatgccggg cgcac

5' end

Intron on sense strand

5' end

gt gcgcccggca tgggcgcagt

3481 ctaatgggtg aaagtcccta gtgcgggttg atagtgccaa gcacatagcc aagggcaagg

3541 gtgtccatcg tgaggtggaa tccgaaggaa gccggaggca aacttctggt ctgacgaaca

3601 gaaatcacat caggcatcgt aagctgggta aggttgcgca acaaactgaa gcccgaaact

3661 atccggaagc ttacggtgta gatgtggcag atagatggaa ggaaagactg cgttcttacc

3721 cggggaggtc tcacggacgg gtggaaacag agtaagaagc ccggttgaaa caagatttat

3781 cgtgagaagt cagcagaggc catagtacgg aggcagcgcg atgccgaagg aagggctgaa

3841 ccataggagg tgtgggtcaa cgaaagttac tgaaagtgac aacttaaaac acagacaact

3901 tcgagaagaa ggctatctgc aaagggtatc tgcggaacag agagagtatg cagaagcgtg

3961 cgcgtcaccg aagatgactg aaaccgacag caccaacaca aacgagcaga cggaaggatt

4021 gctggagcaa attctaagca gagataatct gaatcgtgcc tacaagcagg taaagagaaa

4081 caaaggtgcg ggtggaattg acggaatgca ggtagatgaa cttctaccct tcctgaaaga

4141 aaacaagaac gaacttgtgc aatccctccg ggacggcaaa taccgtccta aacccgtacg

4201 cagggtagaa atacccaaag agaacgggaa gaccagaaag ctggggatac caactgtcgt

4261 ggacaggcta atccaacaag cgatttgcca agtcttgagc ctaatctttg agaaacagtt

4321 ttcaaacaat agctttggat tccgaccgaa aaggagtgca catgatgcac ttaaaagatg

4381 ccagaccaac attacagatg gctacagata cgtagtcgat atggatttgg aaaagtactt

4441 tgacacggtc aaccagagca aactcattca gatactatcg gaaacgataa aagatggacg

4501 agtcattgcg ctgattcaca aattcctgcg agcgggagtt atggtaggcg gaatgtttga

4561 agacagcccc gaaggagtgc cgcaaggcgg acccctgagt ccactgctgg gaaacatcat

4621 gctgaatgaa tgtgaccatg aactggaaag gcgcggacac cgctttgtac gctatgcaga

4681 tgatatgatg attttctgca aaagcaagaa agcggccaat cgtacgctaa accacatcct

4741 cccatacatc gaagagaaat tattcttgag ggtgaatcgg gataaaacac aggtagcaca

4801 cgtgaacaag gtcaaatttc tgggttatgg tttctacatc cataaaggag aagggaggct

4861 caggatacat cccaagagcg tccaaaaatt taaggaaaaa atccgggaag tcacaggacg

4921 tagtaacggg atggggattg agtcaaggaa aatccgattg aaccaagtgg ttcgaggatg

4981 gatgaattac ttcaaactgg tagatgcaaa gaacctcata cagggattgg atgagtggat

5041 aagaagtcgc attcggatgg ttacatggaa acgatggaag aaagtccgta cacgttctga

5101 aaatctcaaa cacctgggaa ttaaggaaga acgggcatgg atgtgggcga atacaagaaa

5161 aggctactgg cgtaccgccc atagtccaat cttattaata gccctatcca acgagaggtt

5221 caaacgtgcc ggatacctca gtttgatgga atgctactct gcgaagtagt gtgtaaactt

5281 tggaaccgcc gtataccgaa cggtacgtac ggtggtgtgg gaggtcggct actcaattaa

5341 tgggtagcct cctacccgat

3' end

[top]

[Intron and flanking sequence]

3481 atgctagcat agctgcattc tccatgatta tctttccatt ttcctcaaca aaaacaacct

3541 tgtctccatc tttgattttt aacttttttc ggatttcaat agggatggta atttgccctc

3601 ttacagtaac ttttgccagt tccatattct caactccttg attgcattga aaataagttt

3661 tttcttatat gatatgtctt ctttgacaaa ttatcaattc cactgttgct tctattgcga

3721 aaagttatta atattcatta gcttacaaaa aggtgttttt tagtggaatc gctgtttcaa

3781 ataatcgggt aggaggctac ccattaattg agtagccgac ctcccacacc accgtacgta