Tr.e.I9

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Information of Tr.e.I9 intron (Format of information for each intron)

Sequence from Genbank entry. Intron is identified in red. The ORF
is identified in blue with start and stop codons underlined.

5' end

1 gtgcgactcg ttggtcacta aaccaggaaa ctgggtataa atgaccgtcc taaatcaata

61 catgggatac cccgatttag aacaactctt attaccttga tggtgaaatt ccatccacct

121 tgttgttagg ttgacagcat aaaccacagg gtagcgactg aacatcaatc cctgaagctg

181 gtttaaaagc gggaaaatac cagttaccga gaaacgatac cgcgagcaaa ggttgacaag

241 tggacgaaca ggaaggtaat caaactcccg tcatacagga ccattccaaa ggtagctgtg

301 gaatgtagga cgaaagtcag aggaataatg ggcataaata tccattggtt tatgtcaaca

361 accattcaag gcctccggga gagtttaccc cactaaatca atcgtaataa aggaataagg

421 gaacgaggaa acctctttaa gacacctaag taaataggtc gaaaacttag gaagccattc

481 aaggtcaatc tacacaaaag ttgtaggtct taaagggaat aggattgagt aagaagcatt

541 gcagatgcag acgtactcac tgttgaacgt aatatagagt aatgattagt catgaacaaa

601 gctgaaatac taaaaagaaa attggacaac ccaaggccct tttcaagtgt ggcatgggac

661 gcttacgata tacctagcca agcgtgtgtt aatccaaacc taaaatggaa agacattaac

721 tggaaaaagg tagaaaagta tgtgtttaag ttacaaaagt taatctatag agcatccagc

781 cgtggcgaaa tccgcaaaat gcgtaaatat caaaaacttc tgaccaaaag ttattatgca

841 aggttgctag ctgtcaggcg cgttacccag gacaaccagg gaaagaaaac tgctggtata

901 gatggcataa aaagccttcc cccaatgcaa agatttaata ccaatttcct aaagtccgac

961 tacacataat gcttcaagaa taaaatcata tcctgtacaa gaagcaatat ctttttgact

1021 aaatccagtt aatatatttc tcaggattct gcgtcagaaa tctaaggaat cgaaaactcg

1081 atttttcaag aattttttca cctctttcca cagtctttca atgggattaa cttcgggaca

1141 ataaggaggt tgaaataata aaatgatgtg atcagggata gataaatcat tccctagatg

1201 ccctcgcccg ttatctagtt gaataatatg aatctcttca ggatatgttt gagaaaaaag

1261 ctctaaaaat ctttcaaagc aaggagtatc tagatgacta aattcataaa aaaaggaatc

1321 tcctgttttt ggttctacta aaccataaag ccatagatat ttaaatagcc attgatataa

1381 accaatgggc ttaacaccgc aagcagtaat gactttacct gttatagttt ttaatccaat

1441 tctagtctcg tcttgacacc aatagcgaat tggcagttga ttttccgaat atttattaat

1501 taacttaatt ttctcttcta gttgagatga gagttttttt taaagttttc ttgagcttct

1561 ttattttgtt ttatgtgatt tggacgtgga acttttaatt tactttttaa tttaaatctg

1621 actaattgat gaactgttcg ataagacagc tcgatgtcaa aacaagtcgt taaccactgt

1681 tgaatttcac catagctttg gaaaccttcc gggttttgca attctgcttc taatttctcg

1741 attacatttg gtggaattga acttggcctc cctcctagat ttttctttgg ttctagtaaa

1801 agattcagtc cacctgtacg atatttccct aaccattttt gtactgtgac tcgattgcgt

1861 cctaacatta tcgcaatttc ttttactgtt tctactgttt gagttttcaa ccagtaaata

1921 gtttgaagtc tttccttttc ttgagctgta ctcgcacttt ttaaaagttt tttgagagtt

1981 tctaccgatt catttatctc aatttttact actcctgaca tggggacatt ttctataata

2041 ggttacttct aaaagtgtag cttaagttta tgaaattagt ataacttggt agaaatgtta

2101 aggtcacgac atcttaaagc aagcccaacc cgtagagtct ggataccaaa accagggaga

2161 gaagaaaaac gcccattagg cataccaact atgtacgaca gggcacttca agcactggta

2221 aagctaggta ggtcaccaga atgggaggcg cttttcgaac ctaatagtta tggtcttttc

2281 cggaggtcaa cacatgatgc tatcgcagca atctatgtca gtattaacca caaaccaaaa

2341 tatgttttag atgctgacat atccaagtgt tttgaccgaa ttaatcatga tgcactgttg

2401 agaaaaatag gtcgaacacc ttacagacga ttaatcaagc aatggttaaa atctggagta

2461 ttcgacaaca aacaattctc aaacactgtg gaaggtacac cacagggagg ggtaatatca

2521 cccttaaaga gcaaacatcg ccctacacgg ggaaagaaaa atgcctaaaa aattacgcag

2581 aaactcttcg agggaacaaa cgtaataata aacatgcatt atccttaata cgatatgctg

2641 atgactttgt aatcctacac aaagacatca aagtattgtt acaagcaaaa accgtaatac

2701 aggaatggtt aaatcatgta ggattagaac taaaaccaga aaaaactaaa attgcccaca

2761 ccttggaaga atatgacggc aacaaacccg gatttgactt cctaggattc acaataaggc

2821 aatggaaagt taagacaacc aaacaaggat tcaaaacact gattaaaccg tcttccaaga

2881 gcataaaaac tcattatcgg aagctggcgg atatatgtga taaacacaaa aacgccccta

2941 caaaagcttt aatagctaaa cttaatccgg tgattagagg atgggccaac tacttctcca

3001 ctataatcag taaagaaacc ttttcaaagc tagattacct actctggaga aggttaggtc

3061 gatggacaag taggaggcat ccaaaataag tcagccaaat gggtcaagaa gaagtacttc

3121 cctcgctgca aagtcaccag aaactggata cttaacgacg gcgagtatat acttaaccaa

3181 cactcagacg ttgctatagt aagacacgtc aaggttaaag gtaataaatc cccattagac

3241 ggtgattgga cttattggag cagtagaata ggaaaacatc caggcataag gaaagaagtt

3301 acaacgctgt taaaacggca aaagaataaa tgcgcatttt gtggactaac ctttagatta

3361 accgacctta tggaaatcga ccatataaaa ccaaggtctg aaggcggtga taacacaact

3421 aaaaacaaac aactgttaca ccgacattgt cacgatacta aaactgcttg attataataa

3481 aacatacaca aaacctaagt tacaggactt acctgatgaa tacctatggg tagatgatat

3541 gttaattcta acacagggat gtacctatga aaaaggacgt ttaggagagg agccggatga

3601 ggtgaaagtc tcacgtccgg ttttgaagac gagtcgggta aggtaactta cctggcgaat

3661 gtttaac

3' end

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[Intron and flanking sequence]

1 gcctataaga cggtagtcag tttggtgagg acgacctttt aaaagggaga aatgattcat

61 aatggccatg tagaaaatct gaaaacctca caggttagca gtgataaatt ttggtcattt

121 gttcaaaaaa acaaaaacat ggtcacatga ataaattgac agaaggtgac tgtgggatag

181 gcatcactca agcttcatcc agcctattaa atttaagtga agcgagtaaa taaacatact

241 gaccagttta ttgaacaatt aattgtcaac acagaaggga aaactaactg taaacaatgg

301 gtgcgactcg ttggtcacta aaccaggaaa ctgggtataa atgaccgtcc taaatcaata

361 catgggatac cccgatttag aacaactctt attaccttga tggtgaaatt ccatccacct

421 tgttgttagg ttgacagcat aaaccacagg gtagcgactg aacatcaatc cctgaagctg

481 gtttaaaagc gggaaaatac cagttaccga gaaacgatac cgcgagcaaa ggttgacaag

541 tggacgaaca ggaaggtaat caaactcccg tcatacagga ccattccaaa ggtagctgtg

601 gaatgtagga cgaaagtcag aggaataatg ggcataaata tccattggtt tatgtcaaca

661 accattcaag gcctccggga gagtttaccc cactaaatca atcgtaataa aggaataagg

721 gaacgaggaa acctctttaa gacacctaag taaataggtc gaaaacttag gaagccattc

781 aaggtcaatc tacacaaaag ttgtaggtct taaagggaat aggattgagt aagaagcatt

841 gcagatgcag acgtactcac tgttgaacgt aatatagagt aatgattagt catgaacaaa

901 gctgaaatac taaaaagaaa attggacaac ccaaggccct tttcaagtgt ggcatgggac

961 gcttacgata tacctagcca agcgtgtgtt aatccaaacc taaaatggaa agacattaac

1021 tggaaaaagg tagaaaagta tgtgtttaag ttacaaaagt taatctatag agcatccagc

1081 cgtggcgaaa tccgcaaaat gcgtaaatat caaaaacttc tgaccaaaag ttattatgca

1141 aggttgctag ctgtcaggcg cgttacccag gacaaccagg gaaagaaaac tgctggtata

1201 gatggcataa aaagccttcc cccaatgcaa agatttaata ccaatttcct aaagtccgac

1261 tacacataat gcttcaagaa taaaatcata tcctgtacaa gaagcaatat ctttttgact

1321 aaatccagtt aatatatttc tcaggattct gcgtcagaaa tctaaggaat cgaaaactcg

1381 atttttcaag aattttttca cctctttcca cagtctttca atgggattaa cttcgggaca

1441 ataaggaggt tgaaataata aaatgatgtg atcagggata gataaatcat tccctagatg

1501 ccctcgcccg ttatctagtt gaataatatg aatctcttca ggatatgttt gagaaaaaag

1561 ctctaaaaat ctttcaaagc aaggagtatc tagatgacta aattcataaa aaaaggaatc

1621 tcctgttttt ggttctacta aaccataaag ccatagatat ttaaatagcc attgatataa

1681 accaatgggc ttaacaccgc aagcagtaat gactttacct gttatagttt ttaatccaat

1741 tctagtctcg tcttgacacc aatagcgaat tggcagttga ttttccgaat atttattaat

1801 taacttaatt ttctcttcta gttgagatga gagttttttt taaagttttc ttgagcttct

1861 ttattttgtt ttatgtgatt tggacgtgga acttttaatt tactttttaa tttaaatctg

1921 actaattgat gaactgttcg ataagacagc tcgatgtcaa aacaagtcgt taaccactgt

1981 tgaatttcac catagctttg gaaaccttcc gggttttgca attctgcttc taatttctcg

2041 attacatttg gtggaattga acttggcctc cctcctagat ttttctttgg ttctagtaaa

2101 agattcagtc cacctgtacg atatttccct aaccattttt gtactgtgac tcgattgcgt

2161 cctaacatta tcgcaatttc ttttactgtt tctactgttt gagttttcaa ccagtaaata

2221 gtttgaagtc tttccttttc ttgagctgta ctcgcacttt ttaaaagttt tttgagagtt

2281 tctaccgatt catttatctc aatttttact actcctgaca tggggacatt ttctataata

2341 ggttacttct aaaagtgtag cttaagttta tgaaattagt ataacttggt agaaatgtta

2401 aggtcacgac atcttaaagc aagcccaacc cgtagagtct ggataccaaa accagggaga

2461 gaagaaaaac gcccattagg cataccaact atgtacgaca gggcacttca agcactggta

2521 aagctaggta ggtcaccaga atgggaggcg cttttcgaac ctaatagtta tggtcttttc

2581 cggaggtcaa cacatgatgc tatcgcagca atctatgtca gtattaacca caaaccaaaa

2641 tatgttttag atgctgacat atccaagtgt tttgaccgaa ttaatcatga tgcactgttg

2701 agaaaaatag gtcgaacacc ttacagacga ttaatcaagc aatggttaaa atctggagta

2761 ttcgacaaca aacaattctc aaacactgtg gaaggtacac cacagggagg ggtaatatca

2821 cccttaaaga gcaaacatcg ccctacacgg ggaaagaaaa atgcctaaaa aattacgcag

2881 aaactcttcg agggaacaaa cgtaataata aacatgcatt atccttaata cgatatgctg

2941 atgactttgt aatcctacac aaagacatca aagtattgtt acaagcaaaa accgtaatac

3001 aggaatggtt aaatcatgta ggattagaac taaaaccaga aaaaactaaa attgcccaca

3061 ccttggaaga atatgacggc aacaaacccg gatttgactt cctaggattc acaataaggc

3121 aatggaaagt taagacaacc aaacaaggat tcaaaacact gattaaaccg tcttccaaga

3181 gcataaaaac tcattatcgg aagctggcgg atatatgtga taaacacaaa aacgccccta

3241 caaaagcttt aatagctaaa cttaatccgg tgattagagg atgggccaac tacttctcca

3301 ctataatcag taaagaaacc ttttcaaagc tagattacct actctggaga aggttaggtc

3361 gatggacaag taggaggcat ccaaaataag tcagccaaat gggtcaagaa gaagtacttc

3421 cctcgctgca aagtcaccag aaactggata cttaacgacg gcgagtatat acttaaccaa

3481 cactcagacg ttgctatagt aagacacgtc aaggttaaag gtaataaatc cccattagac

3541 ggtgattgga cttattggag cagtagaata ggaaaacatc caggcataag gaaagaagtt

3601 acaacgctgt taaaacggca aaagaataaa tgcgcatttt gtggactaac ctttagatta

3661 accgacctta tggaaatcga ccatataaaa ccaaggtctg aaggcggtga taacacaact

3721 aaaaacaaac aactgttaca ccgacattgt cacgatacta aaactgcttg attataataa

3781 aacatacaca aaacctaagt tacaggactt acctgatgaa tacctatggg tagatgatat

3841 gttaattcta acacagggat gtacctatga aaaaggacgt ttaggagagg agccggatga

3901 ggtgaaagtc tcacgtccgg ttttgaagac gagtcgggta aggtaactta cctggcgaat

3961 gtttaactat acagatgatt ggggagggcc taaacgagcc ctacccccaa cagtagagga

4021 tattattggt gaaaaccaaa cccaccataa ggatggaact aacggaattg ttgggtaact

4081 tctaggtctc aagaaaagga aatacttcaa gttatttact ggttaaaaac taaagtagta

4141 gaaacagtca aagaaatttt gattatgtta tactaatttc ataaacttaa gctacacttt

4201 tagaagtaac ctattataga aaatgtcccc atgtcaggag tagtaaaaat tgagataaat

4261 gaatcgg

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[ORF sequence]

MNKAEILKRKLDNPRPFSSVAWDAYDIPSQACVNPNLKWKDINWKKVEKYVFKLQKLI

YRASSRGEIRKMRKYQKLLTKSYYAEMLRSRHLKASPTRRVWIPKPGREEKRPLGIPT

MYDRALQALVKLGRSPEWEALFEPNSYGLFRRSTHDAIAAIYVSINHKPKYVLDADIS

KCFDRINHDALLRKIGRTPYRRLIKQWLKSGVFDNKQFSNTVEGTPQGGVISPLXKSK

HRPTGKEKCLKNYAETLRGNKRNNKHALSLIRYADDFVILHKDIKVLLQAKTVIQEWL

NHVGLELKPEKTKIAHTLEEYDGNKPGFDFLGFTIRQWKVKTTKQGFKTLIKPSSKSI

KTHYRKLADICDKHKNAPTKALIAKLNPVIRGWANYFSTIISKETFSKLDYLLWRRLG

RWTSRRHPK*VSQMGQEEVLPNKSAKWVKKKYFPRCKVTRNWILNDGEYILNQHSDVA

IVRHVKVKGNKSPLDGDWTYWSSRIGKHPGIRKEVTTLLKRQKNKCAFCGLTFRLTDL

MEIDHIKPRSEGGDNTTKNKQLLHRHCHDTKTA

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[Secondary structure]

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