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Information for W.e.I2-1 intron (Format of information for each intron)
[Intron and flanking sequences]
Note: Redundant Copy
AE017258
(60501-62416)
Note: Multiple insertions
W.e.I2-1
AE017196
(245737-243822)
W.e.I2-2
AE017196
(488447-486532)
W.e.I2-3
AE017196
(582567-584482)
Sequence from Genbank entry (intron is on the antisense strand).
The boundaries of the intron are marked as red and ORF is marked
as blue, with start and stop codons underlined.
Intron on antisense strand
3' end
1 gtctggtaga gactcatgac cttgaaacca gcgatttggt ctcataacca tagtctcccc 61 aaaagaaccg tgcttgcgga tttcccgcac acggctccac aatacagcgt tcacactagt 121 gctcctgtgt ataaagaaac atataccttt ggttttggta atggatttac ttttaaatag 181 tgtataaatt gttcccaatc catacttttc ttttgactac gtcggtttat ccacttaaat 241 gctaactttg ttaccggtcg atagaattga atcaaacacc gataatttcc gctaactccg 301 aagtagctat agtgtcctgt tagtttggct ttaagtttct gccaccaatc tttgagacag 361 atacgacttc gtaccatctt caaccattct ttgatttctt taatctttct ggctaggctt 421 atttttgaag ttttctgctt catcataagt ttaccattac gactttttcc acaataatgt 481 gtaaatccta gaaagttgaa gctagccgtc ctacgtttct ctctttctgc ttgataccat 541 tctttcttac caaactttac tatttttgtt ttattttcag ctatttccaa cccaaattta 601 cttagtcttt gtttcagtaa ttctagaaat tcttttgcgt cttcttccct ctcgcagcca 661 actacaaaat cgtcgcaaaa ccttattagc tgtaaatatc ctctggcttt tggcttaaat 721 ttcttttcaa accataagtc cagcacatag tgtaagtata tattagctaa gacagggctt 781 actataccac cttgtggtgt gccttgatcg gttgctttat aacatccaac ttcgactatt 841 cctgccttta gaaatcgttt tattaaccac aataaatttg ggtcagctat tcgttccctt 901 agacaattca ttagccattt atgttgaaca ttatcaaaga acttcttgat atccacttct 961 acaatatagt taattggttt gtgcataact gctttatcta gagcgtttat cgcctgatga 1021 caatttcttc ctggtcgaaa tccatacgag ctgtccataa agtttgcttc ataaatattt 1081 tctaatatct tctttagcat tacctgtacc aacttatctt ccgttgatgg tattccgaga 1141 ccgcgcttct ctttgctccc ggctttgggt atgtataccc ttttcactgg tagcggtgat 1201 attgttttct cttcatacta tccactagtg ttttaagttt ctcttctaga ttttctccat 1261 aagcttccac tgtcacacga tctataccac aagccttgtt gcgttttagt tccttataac 1321 actctgcaag attctcttca ttaatcaaat gaactaatga tgtaaatttt actcgcttat 1381 cttgcttagc ccttactgct atctggttta gttttccttg catactcctc taatctctgt 1441 tgtattggta tagcaatccc tataccagtc actatattgc taaccgcttc cccttgtatg 1501 tggctttccc acactccgag tactatcagt tagtccgact tcctttgcat cttcctccag 1561 tcctcgcctt tattgacttg ttccagagta cccttacagg aatacaaagg atctcccaag 1621 ttcacgtaag gtccatctca acatatgacg cggccttcga tcccgatgag gtgagtaata 1681 tcttgcctta gcgttattac ccatgttgcc ttccaccaaa tgtaaagtgt cagcccccat 1741 gacgcgtgaa ttacgggact caataccttc actttcgttg caccctatgt tgtccattcc 1801 attagcttta ctacgctcgt taccttacgc agcataatgg tttgttccag gttgccggct 1861 aagctttacc cgtgttggat tttcaccaac tgttccttac gcacttcttg gcgcac
5' end
Intron on sense strand
5' end
1 gtgcgccaag aagtgcgtaa ggaacagttg gtgaaaatcc aacacgggta aagcttagcc 61 ggcaacctgg aacaaaccat tatgctgcgt aaggtaacga gcgtagtaaa gctaatggaa 121 tggacaacat agggtgcaac gaaagtgaag gtattgagtc ccgtaattca cgcgtcatgg 181 gggctgacac tttacatttg gtggaaggca acatgggtaa taacgctaag gcaagatatt 241 actcacctca tcgggatcga aggccgcgtc atatgttgag atggacctta cgtgaacttg 301 ggagatcctt tgtattcctg taagggtact ctggaacaag tcaataaagg cgaggactgg 361 aggaagatgc aaaggaagtc ggactaactg atagtactcg gagtgtggga aagccacata 421 caaggggaag cggttagcaa tatagtgact ggtataggga ttgctatacc aatacaacag 481 agattagagg agtatgcaag gaaaactaaa ccagatagca gtaagggcta agcaagataa 541 gcgagtaaaa tttacatcat tagttcattt gattaatgaa gagaatcttg cagagtgtta 601 taaggaacta aaacgcaaca aggcttgtgg tatagatcgt gtgacagtgg aagcttatgg 661 agaaaatcta gaagagaaac ttaaaacact agtggatagt atgaagagaa aacaatatca 721 ccgctaccag tgaaaagggt atacataccc aaagccggga gcaaagagaa gcgcggtctc 781 ggaataccat caacggaaga taagttggta caggtaatgc taaagaagat attagaaaat 841 atttatgaag caaactttat ggacagctcg tatggatttc gaccaggaag aaattgtcat 901 caggcgataa acgctctaga taaagcagtt atgcacaaac caattaacta tattgtagaa 961 gtggatatca agaagttctt tgataatgtt caacataaat ggctaatgaa ttgtctaagg 1021 gaacgaatag ctgacccaaa tttattgtgg ttaataaaac gatttctaaa ggcaggaata 1081 gtcgaagttg gatgttataa agcaaccgat caaggcacac cacaaggtgg tatagtaagc 1141 cctgtcttag ctaatatata cttacactat gtgctggact tatggtttga aaagaaattt 1201 aagccaaaag ccagaggata tttacagcta ataaggtttt gcgacgattt tgtagttggc 1261 tgcgagaggg aagaagacgc aaaagaattt ctagaattac tgaaacaaag actaagtaaa 1321 tttgggttgg aaatagctga aaataaaaca aaaatagtaa agtttggtaa gaaagaatgg 1381 tatcaagcag aaagagagaa acgtaggacg gctagcttca actttctagg atttacacat 1441 tattgtggaa aaagtcgtaa tggtaaactt atgatgaagc agaaaacttc aaaaataagc 1501 ctagccagaa agattaaaga aatcaaagaa tggttgaaga tggtacgaag tcgtatctgt 1561 ctcaaagatt ggtggcagaa acttaaagcc aaactaacag gacactatag ctacttcgga 1621 gttagcggaa attatcggtg tttgattcaa ttctatcgac cggtaacaaa gttagcattt 1681 aagtggataa accgacgtag tcaaaagaaa agtatggatt gggaacaatt tatacactat 1741 ttaaaagtaa atccattacc aaaaccaaag gtatatgttt ctttatacac aggagcacta 1801 gtgtgaacgc tgtattgtgg agccgtgtgc gggaaatccg caagcacggt tcttttgggg 1861 agactatggt tatgagacca aatcgctggt ttcaaggtca tgagtctcta ccagac
3' end
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[Intron and flanking sequences]
1 tttaaagcta aaatacccaa cacttgtgat gataatgtga tccagcaacc taatccctat 61 agtctgacaa gctttagcca agtctttagt tacagcttca tcctcatcag atggctttaa 121 ccttccttct gggtggttat gcgatattat tattgacgtc gcttttctta ttaatgcttt 181 tcttgttact tctcttatgt aaaaaggtac cttatccact gtaccagtaa acacttcttc 241 cccctttaaa cggcactttt gatcaaaata tattattttc atcttttcct cctctgaata 301 gtctggtaga gactcatgac cttgaaacca gcgatttggt ctcataacca tagtctcccc 361 aaaagaaccg tgcttgcgga tttcccgcac acggctccac aatacagcgt tcacactagt 421 gctcctgtgt ataaagaaac atataccttt ggttttggta atggatttac ttttaaatag 481 tgtataaatt gttcccaatc catacttttc ttttgactac gtcggtttat ccacttaaat 541 gctaactttg ttaccggtcg atagaattga atcaaacacc gataatttcc gctaactccg 601 aagtagctat agtgtcctgt tagtttggct ttaagtttct gccaccaatc tttgagacag 661 atacgacttc gtaccatctt caaccattct ttgatttctt taatctttct ggctaggctt 721 atttttgaag ttttctgctt catcataagt ttaccattac gactttttcc acaataatgt 781 gtaaatccta gaaagttgaa gctagccgtc ctacgtttct ctctttctgc ttgataccat 841 tctttcttac caaactttac tatttttgtt ttattttcag ctatttccaa cccaaattta 901 cttagtcttt gtttcagtaa ttctagaaat tcttttgcgt cttcttccct ctcgcagcca 961 actacaaaat cgtcgcaaaa ccttattagc tgtaaatatc ctctggcttt tggcttaaat 1021 ttcttttcaa accataagtc cagcacatag tgtaagtata tattagctaa gacagggctt 1081 actataccac cttgtggtgt gccttgatcg gttgctttat aacatccaac ttcgactatt 1141 cctgccttta gaaatcgttt tattaaccac aataaatttg ggtcagctat tcgttccctt 1201 agacaattca ttagccattt atgttgaaca ttatcaaaga acttcttgat atccacttct 1261 acaatatagt taattggttt gtgcataact gctttatcta gagcgtttat cgcctgatga 1321 caatttcttc ctggtcgaaa tccatacgag ctgtccataa agtttgcttc ataaatattt 1381 tctaatatct tctttagcat tacctgtacc aacttatctt ccgttgatgg tattccgaga 1441 ccgcgcttct ctttgctccc ggctttgggt atgtataccc ttttcactgg tagcggtgat 1501 attgttttct cttcatacta tccactagtg ttttaagttt ctcttctaga ttttctccat 1561 aagcttccac tgtcacacga tctataccac aagccttgtt gcgttttagt tccttataac 1621 actctgcaag attctcttca ttaatcaaat gaactaatga tgtaaatttt actcgcttat 1681 cttgcttagc ccttactgct atctggttta gttttccttg catactcctc taatctctgt 1741 tgtattggta tagcaatccc tataccagtc actatattgc taaccgcttc cccttgtatg 1801 tggctttccc acactccgag tactatcagt tagtccgact tcctttgcat cttcctccag 1861 tcctcgcctt tattgacttg ttccagagta cccttacagg aatacaaagg atctcccaag 1921 ttcacgtaag gtccatctca acatatgacg cggccttcga tcccgatgag gtgagtaata 1981 tcttgcctta gcgttattac ccatgttgcc ttccaccaaa tgtaaagtgt cagcccccat 2041 gacgcgtgaa ttacgggact caataccttc actttcgttg caccctatgt tgtccattcc 2101 attagcttta ctacgctcgt taccttacgc agcataatgg tttgttccag gttgccggct 2161 aagctttacc cgtgttggat tttcaccaac tgttccttac gcacttcttg gcgcacacat 2221 tttacacccc ccttaaaatt aaaacaaaag gtggtaaaca agatgtcaaa cacagataac 2281 tcaactacaa gctggttttt gttgtagtta gatagttatt ttctcacttt ctttacttgc 2341 tttaattaat tcatcaaaat cagattcatg taatttgtcc tgtataactc tgtacttttc 2401 gtattctcct tcagccaggg cttttgcaac ttcagcacta actttaccgg catctttaag 2461 tacttcataa tcattgaata atagaaatgc atccaatttt tcagcccagt cttgca
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Frameshift in ORF (indicated by ///)
MQGKLNQIAVRAKQDKRVKFTSLVHLINEENLAECYKELKRNKACGIDRVTVEAYGENLEEKLKTL
VDSMKRKQYHRYQ*///VKRVYIPKAGSKEKRGLGIPSTEDKLVQVMLKKILENIYEANFMDSSYG
FRPGRNCHQAINALDKAVMHKPINYIVEVDIKKFFDNVQHKWLMNCLRERIADPNLLWLIKRFLKA
GIVEVGCYKATDQGTPQGGIVSPVLANIYLHYVLDLWFEKKFKPKARGYLQLIRFCDDFVVGCERE
EDAKEFLELLKQRLSKFGLEIAENKTKIVKFGKKEWYQAEREKRRTASFNFLGFTHYCGKSRNGKL
MMKQKTSKISLARKIKEIKEWLKMVRSRICLKDWWQKLKAKLTGHYSYFGVSGNYRCLIQFYRPVT
KLAFKWINRRSQKKSMDWEQFIHYLKVNPLPKPKVYVSLYTGALV
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