List
of Chloroplast Group II introns by Organism
Clicking on the intron
name in the “Species” column brings up full information for individual introns,
including intron sequence, GenBank annotation, flanking sequence, ORF sequence
and intron RNA structure. Other links in the Table provide additional
information. The table is adapted from Zimmerly et al
(2001), which can be consulted for more detailed description of
the table. Also, a description of the content of the table can be found here.
Group II introns in chloroplast genomes
|
Species |
Organism
Class |
Host
gene |
Intron |
ORF
domains |
Size (aa) |
ORF fused
with upstream exon? |
Accession
number |
|
ORF
Containing Introns |
|||||||
| Nicotiana tabacum | Plant | trnK |
I1 |
RT(5-7)-X | 509 |
No |
NC_001879 |
| Marchantia polymorpha | Plant | trnK |
I1 |
RT(5-7)-X |
370 |
No |
X04465 |
| Scenedesmus obliquus | Green Algae | petD |
I1 |
RT-X-Zn | 608 |
No |
P19593 |
| Oocystacea sp. | Green Algae | petD |
I1 |
RT-X-Zn | 608 |
No |
S05341 |
| Bryopsis maxima | Green Algae | rbcL |
I1 |
RT-X | 478 |
No |
X55877 |
| Pyrenomonas salina | Green Algae | cpn60 |
I1 |
RT-X | 452 |
No |
X81356 |
| Euglena gracilis | Euglenoid | psbC |
I4 |
RT-X | 458 |
No |
X70810 |
| Euglena gracilis | Euglenoid | psbD |
I8 |
RT-X | 506 |
No |
X70810 |
| Euglena deces | Euglenoid | psbC |
I4 |
RT-X | 453 |
No |
Z99833 |
| Euglena myxocylindracea | Euglenoid | psbC |
I4 |
RT-X | 436 |
No |
Z99835 |
| Euglena viridis | Euglenoid | psbC |
I4 |
RT-X | 468 |
No |
Z99836 |
| Lepocinclis buetschlii | Euglenoid | psbC |
I4 |
RT-X | 451 |
No |
Z99834 |
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