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List of Mitochondrial Group II introns by Organism  

      Clicking on the intron name in the “Species” column brings up full information for individual introns, including intron sequence, GenBank annotation, flanking sequence, ORF sequence and intron RNA structure. Other links in the Table provide additional information. The table is adapted from Zimmerly et al (2001), which can be consulted for more detailed description of the table. Also, a description of the content of the table can be found here.

 

Group II introns in mitochondrial genomes

 

 

Species

 

Organism Class

Host gene

Intron

ORF domains

Size (aa)

 

ORF fused with upstream exon?

Accession  number

ORF Containing Introns

Arabidopsis thaliana

Green Plant

nad1

I4

RT(2-7)-En

656

No

X98300

Glycine max

Green Plant

nad1

I4

RT(2-7)-En

668

No

U09988

Oenothera berteriana

Green Plant

nad1

I4

RT(2-7)-En

655

No

M63034

Vicia faba

Green Plant

nad1

I4

RT(2-7)-En

665

No

M30176

Zea mays

Green Plant

nad1

I4

RT(2-7)-En

653

No

U09987

Marchantia polymorpha

Liverwort

atpA

I1

RT-X-En

1064

Yes

M68929

Marchantia polymorpha

Liverwort

atpA

I2

RT-X

909

Yes

M68929

Marchantia polymorpha

Liverwort

atp9

I1

RT-X

771

Yes

M68929

Marchantia polymorpha

Liverwort

cob1

I3

RT-X-En

949

Yes

M68929

Marchantia polymorpha

Liverwort

cox1

I1

RT-X-En

914

Yes

M68929

Marchantia polymorpha

Liverwort

cox1

I2

RT-X-En

836

Yes

M68929

Marchantia polymorpha

Liverwort

cox2

I2

RT-X

743

Yes

M68929

Marchantia polymorpha

Liverwort

SSU

I1

RT-X-En

502

No

M68929

Chara vulgaris Algae nad3 I2 RT-X

558

No

AY267353
Mesostigma viride Algae cox2 I1 RT(6)-X

219

No

NC_008240

Porphyra purpurea

Algae

LSU rDNA

I1

RT-X-En

544

No

AF114794

Porphyra purpurea

Algae

LSU rDNA

I2

RT-X-En

546

No

AF114794

Pavlova lutheri Algae cox1 I1 RT-X 636

No

AF045691

Pylaiella littoralis

Algae

LSU rDNA

I1

RT-X-En

557

No

Z48620

Pylaiella littoralis

Algae

LSU rDNA

I2

RT-X-En

568

No

Z48620

Pylaiella littoralis

Algae

cox1

I1

RT-X-En

757

No

Z72500

Pylaiella littoralis

Algae

cox1

I2

RT-X-En

795

No

Z72500

Pylaiella littoralis

Algae

cox1

I3

RT-X-En

748

No

Z72500

Thalassiosira pseudoana Algae cox1 I1 RT-X 718

No

NC_007405
Rhodomonas salina Algae cox1 I1 RT-X 621

No

NC_002572
Rhodomonas salina Algae cox1 I2 RT-X 762

No

NC_002572

Allomyces macrogynus

Fungus

cox1

I3

RT-X-En

785

Yes

U41288

Rhizphydium sp. 136 Fungus cox1 I11

LAGLIDADG

263

Yes

NC_003053

Neurospora crassa

Fungus

cox1

I1

RT-X-En

835

Yes

X14669

Podospora anserina

Fungus

cox1

I1

RT-X-En

787

Yes

X55026

Podospora anserina

Fungus

cox1

I4

RT-X-En

789

Yes

X55026

Podospora anserina

Fungus

nad5

I4

RT-X

779

Yes

X55026

Podospora comata

Fungus

cox1

I1

RT-X-En

783

Yes

Z69899

Podospora curvicolla

Fungus

nad5

I1

RT-X

745

Yes

Z69898

Venturia inaequalis

Fungus

cob1

I1

RT-X

707

Yes

AF004559

Candida parapsilosis Yeast cox1

I1

RT-X-En

933

Yes

NC_005253
Candida stellata Yeast LSU

I1

RT-X

445

No

NC_005972

Kluyveromyces lactis

Yeast

cox1

I1

RT-X-En

786

Yes

X57546

Saccharomyces cerevisiae

Yeast

cox1

I1

RT-X-En

778

Yes

V00694

Saccharomyces cerevisiae

Yeast

cox1

I2

RT-X-En

785

Yes

V00694

Schizosaccaromyces pombe EF2

Yeast

cob1

I1

RT-X-En

807

Yes

X54421

Schizosaccaromyces pombe

Yeast

cox1

I1

RT-X-En

787

Yes

AJ251292

Schizosaccaromyces pombe

Yeast

cox2

I1

RT-X-En

778

Yes

AJ251293

Schizosaccharomyces octosporus Yeast cox2 I1

RT-X-En

777

Yes

NC_004312
Amoebidium parasiticum Ichthyospora cox1 I6

LAGLIDADG

207

No

AF538043

 

 

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