List
of Mitochondrial Group II introns by Organism
Clicking on the intron
name in the “Species” column brings up full information for individual introns,
including intron sequence, GenBank annotation, flanking sequence, ORF sequence
and intron RNA structure. Other links in the Table provide additional
information. The table is adapted from Zimmerly et al
(2001), which can be consulted for more detailed description of
the table. Also, a description of the content of the table can be found here.
Group II introns in mitochondrial genomes
|
Species |
Organism
Class |
Host
gene |
Intron |
ORF
domains |
Size (aa) |
ORF fused
with upstream exon? |
Accession
number |
|
ORF
Containing Introns |
|||||||
|
Green Plant |
nad1 |
I4 |
656 |
No |
|||
|
Green Plant |
nad1 |
I4 |
668 |
No |
|||
|
Green Plant |
nad1 |
I4 |
655 |
No |
|||
|
Green Plant |
nad1 |
I4 |
665 |
No |
|||
|
Green Plant |
nad1 |
I4 |
653 |
No |
|||
|
Liverwort |
atpA |
I1 |
1064 |
Yes |
|||
|
Liverwort |
atpA |
I2 |
909 |
Yes |
|||
|
Liverwort |
atp9 |
I1 |
771 |
Yes |
|||
|
Liverwort |
cob1 |
I3 |
949 |
Yes |
|||
|
Liverwort |
cox1 |
I1 |
914 |
Yes |
|||
|
Liverwort |
cox1 |
I2 |
836 |
Yes |
|||
|
Liverwort |
cox2 |
I2 |
743 |
Yes |
|||
|
Liverwort |
SSU |
I1 |
502 |
No |
|||
| Chara vulgaris | Algae | nad3 | I2 | RT-X |
558 |
No |
AY267353 |
| Mesostigma viride | Algae | cox2 | I1 | RT(6)-X |
219 |
No |
NC_008240 |
|
Algae |
LSU rDNA |
I1 |
544 |
No |
|||
|
Algae |
LSU rDNA |
I2 |
546 |
No |
|||
| Pavlova lutheri | Algae | cox1 | I1 | RT-X | 636 |
No |
AF045691 |
|
Algae |
LSU rDNA |
I1 |
557 |
No |
|||
|
Algae |
LSU rDNA |
I2 |
568 |
No |
|||
|
Algae |
cox1 |
I1 |
757 |
No |
|||
|
Algae |
cox1 |
I2 |
|
No |
|||
|
Algae |
cox1 |
I3 |
748 |
No |
|||
| Thalassiosira pseudoana | Algae | cox1 | I1 | RT-X | 718 |
No |
NC_007405 |
| Rhodomonas salina | Algae | cox1 | I1 | RT-X | 621 |
No |
NC_002572 |
| Rhodomonas salina | Algae | cox1 | I2 | RT-X | 762 |
No |
NC_002572 |
|
Fungus |
cox1 |
I3 |
785 |
Yes |
|||
| Rhizphydium sp. 136 | Fungus | cox1 | I11 | 263 |
Yes |
NC_003053 | |
|
Fungus |
cox1 |
I1 |
835 |
Yes |
|||
|
Fungus |
cox1 |
I1 |
787 |
Yes |
|||
|
Fungus |
cox1 |
I4 |
789 |
Yes |
|||
|
Fungus |
nad5 |
I4 |
779 |
Yes |
|||
|
Fungus |
cox1 |
I1 |
783 |
Yes |
|||
|
Fungus |
nad5 |
I1 |
745 |
Yes |
|||
|
Fungus |
cob1 |
I1 |
707 |
Yes |
|||
| Candida parapsilosis | Yeast | cox1 |
I1 |
RT-X-En |
933 |
Yes |
NC_005253 |
| Candida stellata | Yeast | LSU |
I1 |
RT-X |
445 |
No |
NC_005972 |
|
Yeast |
cox1 |
I1 |
786 |
Yes |
|||
|
Yeast |
cox1 |
I1 |
778 |
Yes |
|||
|
Yeast |
cox1 |
I2 |
785 |
Yes |
|||
|
Yeast |
cob1 |
I1 |
807 |
Yes |
|||
|
Yeast |
cox1 |
I1 |
787 |
Yes |
|||
|
Yeast |
cox2 |
I1 |
778 |
Yes |
|||
| Schizosaccharomyces octosporus | Yeast | cox2 | I1 |
777 |
Yes |
NC_004312 | |
| Amoebidium parasiticum | Ichthyospora | cox1 | I6 |
207 |
No |
AF538043 | |
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